DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-4 and Smyd1

DIOPT Version :9

Sequence 1:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster
Sequence 2:NP_001153599.1 Gene:Smyd1 / 12180 MGIID:104790 Length:490 Species:Mus musculus


Alignment Length:431 Identity:90/431 - (20%)
Similarity:153/431 - (35%) Gaps:131/431 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 VEHSDIY-----GRYLVANRQLEAGETLIREEPLAIGPCVSGDPVCLGCYHPVSLKADQYRCPGC 110
            :|:.:::     ||.|.|.::..|.:.:..|.  |....|....:...|:.....:...:||..|
Mouse     6 MENVEVFTSEGKGRGLKATKEFWAADVIFAER--AYSAVVFDSLINFVCHTCFKRQEKLHRCGQC 68

  Fly   111 AWP-LCGSTC---AGLKHRHGHTETECQLYAERRAVAGELL---------TERAGPAEVRDLYEL 162
            .:. .|..||   |.|.|::     ||....:...|..|.:         .||.|..    |.|.
Mouse    69 KFAHYCDRTCQKDAWLNHKN-----ECAAIKKYGKVPNENIRLAARIMWRVEREGTG----LTEG 124

  Fly   163 VMIVRILLLRQHDPEQFALIARMESHTEERRQNAVLWRHYEEKVVQRLRVT-------W--QLED 218
            .::               .:..:::|.|          |:.|:..:.|||.       |  |.:.
Mouse   125 CLV---------------SVDDLQNHVE----------HFGEEEQKELRVDVDTFLQYWPPQSQQ 164

  Fly   219 LEAEQVHEVCGILDVNCFEIG-QNGAKA--RTLYPSAFLLAHDCTPNTA-------HTDDPSSF- 272
            ...:.:..:.|:::.|.|.:. |.|.:|  ..::|:..|:.|||.||..       |....|.| 
Mouse   165 FSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFH 229

  Fly   273 ---EILLRTSRRVREREALTLSYAYTLQGTLKRRAFMHEGKLFWCCCRRCSDPRELGTDCSALVC 334
               .|.||...::.|.|.||:||...|..:.:||..:.:...|.|.|..|    :.|......:.
Mouse   230 TQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHC----QKGLKDDLFLA 290

  Fly   335 ATCRTGSVRAVDPLQQTGDWACDRCAHKMGATEVERQLDRINND-LEDIDVHDIPGLENFLLRYR 398
            |        ..||               ..:.||.:::.:.:.| ||.||.....||      |.
Mouse   291 A--------KEDP---------------KPSQEVVKEMIQFSKDTLEKIDKARSEGL------YH 326

  Fly   399 DVLRPNHYLLLSAKYSLCQ--------IYGRTEGYLLPQMS 431
            :|::            ||:        ::..|..|:|..:|
Mouse   327 EVVK------------LCRECLEKQEPVFADTNLYVLRLLS 355

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
SmydA-4NP_572675.1 None
Smyd1NP_001153599.1 SET_SMYD1 7..281 CDD:380924 69/313 (22%)
S-adenosyl-L-methionine binding 17..19 0/1 (0%)
zf-MYND 52..90 CDD:396356 10/42 (24%)