DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-4 and MSS51

DIOPT Version :10

Sequence 1:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster
Sequence 2:NP_001019764.1 Gene:MSS51 / 118490 HGNCID:21000 Length:460 Species:Homo sapiens


Alignment Length:233 Identity:51/233 - (21%)
Similarity:65/233 - (27%) Gaps:114/233 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 EALTLSYAYT---------------LQGTLKRRAFMHEGKLFWCCCRRCSDPRELGTDCSALVCA 335
            :|:.:|:|.|               |||:|||           ......|.|..||....||...
Human   203 DAVLVSHAVTTLWASVGRPRPDPDVLQGSLKR-----------LLTDVLSRPLTLGLGLRALGID 256

  Fly   336 TCRTGSVRAVDPLQQTGDWACDRCAHKMGATEVERQLDRINNDLEDIDVHDIPGLENFLLRYRDV 400
            ..|||.                ...|.:||:.|                      |.||      
Human   257 VRRTGG----------------STVHVVGASHV----------------------ETFL------ 277

  Fly   401 LRPNHYLLLSAKYSLCQIYGRTEGYLLP-------QMSPEDIARKESYCREFLEIVDVLDPGLTR 458
            .||..|..|              ||:.|       .|...|:|...|....    ...|:||..:
Human   278 TRPGDYDEL--------------GYMFPGHLGLRVVMVGVDVATGFSQSTS----TSPLEPGTIQ 324

  Fly   459 L---RGLIMY-----------ELHAPVMVLAQSAFQSG 482
            |   |||  |           :.|.|.:|   :||..|
Human   325 LSAHRGL--YHDFWEEQVETGQTHHPDLV---AAFHPG 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-4NP_572675.1 SET_SMYD <230..319 CDD:380997 10/47 (21%)
MSS51NP_001019764.1 zf-MYND 105..149 CDD:460312
MSS51_C 243..423 CDD:466330 40/182 (22%)
Blue background indicates that the domain is not in the aligned region.

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