DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-4 and smyd2

DIOPT Version :9

Sequence 1:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster
Sequence 2:XP_002934751.2 Gene:smyd2 / 100495522 XenbaseID:XB-GENE-985583 Length:430 Species:Xenopus tropicalis


Alignment Length:442 Identity:84/442 - (19%)
Similarity:140/442 - (31%) Gaps:142/442 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 PYRVEHSDIYGRYLVANRQLEAGETLIREEPLAIGPCVSGDPV-------------CLGCYHPVS 99
            |..:|..|..|:          |..|....|.|:|..:...|.             |..|:   :
 Frog     4 PEGLERFDSPGK----------GRGLKATRPFALGELLFSCPAYTYVLTVNERGNHCEFCF---A 55

  Fly   100 LKADQYRCPGCA-------------WPL----CGSTCAGLKHRHGHTETECQLYAERRAVAGELL 147
            .|....:|..|.             ||:    |.:.|.       :.:..|              
 Frog    56 RKEGLSKCGKCKQAFYCNVDCQKGDWPMHKLECSAMCT-------YGQNWC-------------- 99

  Fly   148 TERAGPAEVRDLYELVMIVRILLLRQHDPEQFALIARMESHTE-------ERRQN--AVLWRHYE 203
                 |:|...|...::..:.....:...|:|..:...|||..       |..||  |.|.|.|.
 Frog   100 -----PSETVRLTARILAKQKTQTERTASERFLSVKDFESHLSKLDNEKLELIQNDIAALHRFYS 159

  Fly   204 EKVVQRLRVTWQLEDLEAEQVHEVCGILDVNC-------FEIGQNGAKARTLYPSAFLLAHDCTP 261
            :.:..            ::...:|.....|||       .|:...|:   .::|...|:.|.|.|
 Frog   160 KNLHY------------SDNAAQVFLFAQVNCNGFTIEDEELSHLGS---AIFPDVALMNHSCCP 209

  Fly   262 NTAHTDDPSSFEILLRTSRRVREREALTLSYAYTLQGTLKRRAFMHEGKLFWCCCRRCS----DP 322
            |...|...:..|:  |..:.:...:.:..||...|..|..|...:.:...|.|.||.||    ||
 Frog   210 NVIVTYKGTVAEV--RAVQEIHAGDEVFTSYIDLLYPTEDRNDRLIDSYFFNCDCRECSTKQKDP 272

  Fly   323 -----RELGTDCSALVCATCRTGSVRAVDPLQQTGDWACDRCAHKMGATEV----ERQLDRINND 378
                 |:|....|..|.......:...|:..:        |..|....:|:    |..|:::.:.
 Frog   273 AKLEIRKLSDPPSPQVVRDMIKYARNVVEEFR--------RAKHYKTPSELLEICELSLEKMGSV 329

  Fly   379 LEDIDVHDIPGLENFL------------LRYRD-VLRP--NHYLLLSAKYSL 415
            .||.:|:.:..:...:            |:|.: :::|  .||    ..|||
 Frog   330 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGEKIIKPYSKHY----PPYSL 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-4NP_572675.1 None
smyd2XP_002934751.2 zf-MYND 50..88 CDD:280009 7/40 (18%)
SET 145..238 CDD:279228 22/109 (20%)
TPR_12 336..409 CDD:290160 8/46 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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