DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-4 and smyd3

DIOPT Version :9

Sequence 1:NP_572675.1 Gene:SmydA-4 / 32034 FlyBaseID:FBgn0030257 Length:532 Species:Drosophila melanogaster
Sequence 2:XP_031758360.1 Gene:smyd3 / 100494527 XenbaseID:XB-GENE-854970 Length:448 Species:Xenopus tropicalis


Alignment Length:504 Identity:121/504 - (24%)
Similarity:170/504 - (33%) Gaps:140/504 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 DKEQSPSPTEEKELPYRVEHSDIYGRYLVANRQLEAGETLIREEPLAIGPCVSGDPVCLGCYHPV 98
            :|.|||..                |..:.|.:.:..|.|::..||.....|    .:...|.|.:
 Frog    27 EKFQSPGK----------------GNGVRALKDMSHGLTVMIAEPYVYTVC----RIKTACDHCL 71

  Fly    99 SLKADQYRCPGC-AWPLCGSTCAGLKHRHGHTETECQLYAERRAVAGELLTERAGPAEVRDLYEL 162
            ..|....||..| ....|.|.|. .|...|| :.||:....        ......|..||    |
 Frog    72 HRKEKLLRCSQCKVARYCNSHCQ-RKAWQGH-KRECKCLRS--------TLPNVPPNSVR----L 122

  Fly   163 VMIVRILLLRQHD--PEQFALIARMESHTEER--------RQNAVLWRHYEEKVVQRLRVTWQLE 217
            |..:...:|::.|  .|:...|:.::||.:|.        |..|...:||.::.:|.:.   ||.
 Frog   123 VGKIIFKMLQKPDTASEELYTISDLQSHIKEASEEVKDGLRHLATALQHYLKEEIQEIS---QLP 184

  Fly   218 DLEAEQVHEVCGILDV----NCFEI--GQNGAKARTLYPSAFLLAHDCTPNTAHTDDPSSFE--- 273
              ...||.|..|.:..    |.|.|  |:.......||||..||.|.|.||....     ||   
 Frog   185 --PGFQVLEYFGKVSAKVTCNSFTISDGEMQDVGVGLYPSMSLLNHSCDPNCVIV-----FEGTC 242

  Fly   274 ILLRTSRRVREREALTLSYAYTLQGTLKRRAFMHEGKLFWCCCRRCSDPRELGTDCSALVCATCR 338
            :||||.:.:.:.|.||:||......|..||..:.....|.|.|:||                   
 Frog   243 LLLRTVKEIPKGEELTISYIDVKMPTQGRRDQLQRQYCFLCDCQRC------------------- 288

  Fly   339 TGSVRAVDPLQQTGDWACDRCAHKMGATEVERQLDRINNDLEDIDVHDIPGLENFLLRYRDVLRP 403
              .:|..|.....||....|        |||..:.|:...|......:...|...|:        
 Frog   289 --LLRDKDEDMLAGDAEASR--------EVESSVSRLEELLSQNTAEEALNLCKTLM-------- 335

  Fly   404 NHYLLLSAKYSLCQIYGRTEGYLLPQMSPEDIARKESYCREFLEIVDVLDPGLTR------LRGL 462
            |.|.|...     .||         |:...|.|...|           :|.||..      ||.|
 Frog   336 NRYYLPDK-----NIY---------QLKILDCAMDAS-----------IDLGLWEEALHFGLRTL 375

  Fly   463 IMYEL----HAPVMVLAQSAFQSGQISRQEFQRRLKEVVKLLQVSRDIL 507
            ..|.|    :.||.  |....:.|::  |.:|....|.:|.|:.:.||:
 Frog   376 EPYSLYYSNYHPVR--AVQLMKVGKL--QNYQGLFAEAMKTLKQAFDIM 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-4NP_572675.1 None
smyd3XP_031758360.1 SET_SMYD3 24..289 CDD:380980 81/326 (25%)
zf-MYND 67..105 CDD:396356 12/39 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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