DRSC/TRiP Functional Genomics Resources

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Protein Alignment C901 and crb

DIOPT Version :9

Sequence 1:NP_572673.1 Gene:C901 / 32032 FlyBaseID:FBgn0021742 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster


Alignment Length:385 Identity:107/385 - (27%)
Similarity:157/385 - (40%) Gaps:111/385 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 KSQKQRQNAHYVCDEK------------GDFKCL--PGWQGDLCQ---------VPMCRRGCDPM 91
            :|..||..:...|.::            |::.|:  .|:.|..||         :.:....|:..
  Fly   593 QSPTQRSASLNACPQENCLNGGTCLGYSGNYSCICASGYTGYNCQTSTGDGASALALTPINCNAT 657

  Fly    92 NGYCQRPG-------ECRCRIGYSGELCDK---CIPLPGCQHGGCTKPF-----ECICKPGWAGL 141
            ||.|...|       .|.|.:||||:.|:|   |.||      .|.:|.     :|:|.......
  Fly   658 NGKCLNGGTCSMNGTHCYCAVGYSGDRCEKAENCSPL------NCQEPMVCVQNQCLCPENKVCN 716

  Fly   142 FCTEPSCRTGCHSTRGYC-EAPG---ECRCRIGYAGRTC----SECATMPG-CQHGTCNK---PL 194
            .|....|:.|     |.| :.|.   ||:|..|:.||||    .||...|. |.:|.|..   ..
  Fly   717 QCATQPCQNG-----GECVDLPNGDYECKCTRGWTGRTCGNDVDECTLHPKICGNGICKNEKGSY 776

  Fly   195 ECLCLPGYTGLLCQTPICDPDC------------SKQHGYCRKPGECRCKVGWTGSQC----DKC 243
            :|.|.||:||:.|.:.:  .:|            :|.:.|     ||.|:.|:.|..|    |:|
  Fly   777 KCYCTPGFTGVHCDSDV--DECLSFPCLNGATCHNKINAY-----ECVCQPGYEGENCEVDIDEC 834

  Fly   244 FPYPGCANG----DCEAPWECNCHPGWGGMLCDEKLTYCVEHPDTCENGGKCTSLSREDGSYQCQ 304
            ...| |:||    |....:.|||.||..|.:||..:..||..|  |.|||:|..   :.|.::|.
  Fly   835 GSNP-CSNGSTCIDRINNFTCNCIPGMTGRICDIDIDDCVGDP--CLNGGQCID---QLGGFRCD 893

  Fly   305 CR-QGFLGKNCEIRDDFLLTSEAPPRITPPTPAELVLEL---------DGELDQNGQQDI 354
            |. .|:.|:|||:..|..|::       |.|.....|:.         :|...:|.:|||
  Fly   894 CSGTGYEGENCELNIDECLSN-------PCTNGAKCLDRVKDYFCDCHNGYKGKNCEQDI 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
C901NP_572673.1 DSL <56..79 CDD:302925 5/36 (14%)
EGF_CA 280..315 CDD:238011 12/35 (34%)
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF_CA 386..423 CDD:238011
EGF_CA 425..460 CDD:238011
EGF 466..495 CDD:278437
EGF 605..633 CDD:278437 4/27 (15%)
EGF_CA 716..750 CDD:238011 12/38 (32%)
EGF_CA 753..789 CDD:238011 12/35 (34%)
EGF_CA 792..828 CDD:238011 8/42 (19%)
EGF_CA 830..865 CDD:238011 13/35 (37%)
EGF_CA 868..905 CDD:238011 14/41 (34%)
EGF_CA 907..943 CDD:238011 7/42 (17%)
EGF_CA 1009..1045 CDD:238011
EGF_CA 1047..1082 CDD:238011
Laminin_G_1 1155..1290 CDD:278483
EGF 1316..1346 CDD:278437
Laminin_G_1 1388..1550 CDD:278483
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:280389
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24044
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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