DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Fb and RAB8C

DIOPT Version :10

Sequence 1:NP_727472.1 Gene:Rab9Fb / 32029 FlyBaseID:FBgn0052670 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_195972.1 Gene:RAB8C / 831817 AraportID:AT5G03520 Length:216 Species:Arabidopsis thaliana


Alignment Length:217 Identity:98/217 - (45%)
Similarity:136/217 - (62%) Gaps:17/217 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SQYDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDFRVRNVELAGRMVMLQIWDTAGD 66
            |.||||.|:|::||.||||||||:||||:.||...:.|:|:||::|.|||.|:.:.||||||||.
plant    10 SDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQ 74

  Fly    67 ERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDGWLKEIRRMSSESVNVMLVGNKCD-DLDNRQV 130
            |||:::..:|||||.|||||||:|...||.||..|:|.|.:.:|::||.:|||||.| |...|.|
plant    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKADMDESKRAV 139

  Fly   131 RMEQGFNYANHRALGFYEVSAKSGANVNDVFNMLSVGIYNRLVIHTPNRLSGGQETEDTAEPPDE 195
            ...:|...|:...:.|:|.|||:..||.:||..::..|..||.           ||:..|||  :
plant   140 PTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLT-----------ETDTKAEP--Q 191

  Fly   196 PINLAGKDRQRAK---DSNTCC 214
            .|.:..:|...:.   :.:.||
plant   192 GIKITKQDTAASSSTAEKSACC 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9FbNP_727472.1 Rab 8..165 CDD:206640 81/157 (52%)
RAB8CNP_195972.1 Rab8_Rab10_Rab13_like 13..180 CDD:206659 85/166 (51%)

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