DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Fb and Rab40

DIOPT Version :10

Sequence 1:NP_727472.1 Gene:Rab9Fb / 32029 FlyBaseID:FBgn0052670 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster


Alignment Length:182 Identity:67/182 - (36%)
Similarity:98/182 - (53%) Gaps:18/182 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMD----------FRVRNVELAGRMVML 58
            ||||.|:|::||..|||..:|....|.. ||...|: |.|          ::...:.|.|:.|.|
  Fly     8 YDYLLKVLLVGDSDVGKHEILSNLEDPS-TESPFCS-GNDCTSHILQTVAYKTTTILLEGKRVKL 70

  Fly    59 QIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDGWLKEIRRMSSESVNVMLVGNKCD 123
            |:|||:|..||.:::.||.|||.||:||||||:..||..||.||||:.. .:..:..:||||:..
  Fly    71 QLWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDE-HAPGIPKVLVGNRLH 134

  Fly   124 DLDNRQVRMEQGFNYANHRALGFYEVSAKSGANVNDVFNMLSVGIYNRLVIH 175
            ....|||..:|...||:...:..:|:|.....|:.:.|..|:     |:.:|
  Fly   135 LAFKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELA-----RMALH 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9FbNP_727472.1 Rab 8..165 CDD:206640 60/166 (36%)
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 67/182 (37%)
SOCS 192..234 CDD:470605
Blue background indicates that the domain is not in the aligned region.

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