DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab9Fb and rab-8

DIOPT Version :10

Sequence 1:NP_727472.1 Gene:Rab9Fb / 32029 FlyBaseID:FBgn0052670 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_491199.2 Gene:rab-8 / 171935 WormBaseID:WBGene00004272 Length:211 Species:Caenorhabditis elegans


Alignment Length:212 Identity:87/212 - (41%)
Similarity:131/212 - (61%) Gaps:9/212 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 YDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDFRVRNVELAGRMVMLQIWDTAGDER 68
            ||||||:|::||.||||:|:|.||||:.|....:.|:|:||::|.:||.|:.:.||||||||.||
 Worm     5 YDYLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 69

  Fly    69 FKSLLPSYYRGAHGILLVYDITSSKSFRNIDGWLKEIRRMSSESVNVMLVGNKCDDLDNRQVRME 133
            |:::..:|||||.||:||||||:.:||.||..|::.|...::..|..|::|||||..:.|:|..:
 Worm    70 FRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDVERMIIGNKCDIEERREVSRD 134

  Fly   134 QGFNYANHRALGFYEVSAKSGANVNDVFNMLSVGIYNRLVIHTPNRLSGGQETEDTAEPPDEPIN 198
            :|...|......|.|.|||:..|:::.|..|:..|.:::   ..|.:..|....:|..     :|
 Worm   135 RGEQLAIEYGTKFLETSAKANLNIDEAFFTLARDIKSKM---EQNEMRAGGSVSNTGR-----VN 191

  Fly   199 LAGKDRQRAK-DSNTCC 214
            :.|...|:.. .||..|
 Worm   192 VGGSGTQKKSFFSNWSC 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab9FbNP_727472.1 Rab 8..165 CDD:206640 72/156 (46%)
rab-8NP_491199.2 Rab8_Rab10_Rab13_like 6..172 CDD:206659 77/165 (47%)

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