DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myo10A and Myo1d

DIOPT Version :10

Sequence 1:NP_001036269.2 Gene:Myo10A / 32028 FlyBaseID:FBgn0263705 Length:3145 Species:Drosophila melanogaster
Sequence 2:NP_037115.2 Gene:Myo1d / 25485 RGDID:621321 Length:1006 Species:Rattus norvegicus


Alignment Length:1076 Identity:340/1076 - (31%)
Similarity:510/1076 - (47%) Gaps:175/1076 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 ARQDLGSSGVEDMTLLDDLHEASLLWNLRLRYDKGLIYTFAGSILIAVNPYKMFPDAYGLEVAKQ 212
            |.|:....|..|..|:|.:.....:.|||||::||.||||.|.::::|||||:. :.||.:..:|
  Rat     2 AEQESLEFGKADFVLMDTVSMPEFMANLRLRFEKGRIYTFIGEVVVSVNPYKVL-NIYGRDTIEQ 65

  Fly   213 YAGRPLGSLPPHLFAIGAAAHAAL---PSPQVVVISGESGSGKTESTKLVMQYLAAVV-PGGGSA 273
            |.||.|...|||||||..||:.|:   .....::||||||:||||::|.:|||:||:. |...:.
  Rat    66 YKGRELYERPPHLFAIADAAYKAMKRRSKDTCIMISGESGAGKTEASKYIMQYIAAITNPSQRAE 130

  Fly   274 SAVITEQILEAAPLLEAFGNARTARNDNSSRFGKYLEVYFK-SGAIVGAKITQYLLEKSRIVTQA 337
            ...:...:|::..:|||||||:|.|||||||||||:::.|. .|..:|..|..|||||||::.|.
  Rat   131 IERVKNMLLKSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPIGGHINNYLLEKSRVIVQQ 195

  Fly   338 PGERNYHVFYELLGGLSETERSKYGLLEA-DKYFYLNQGA------TDCASGRVDWESLQGAMQV 395
            ||||::|.||:||.|.||.......|.:: ..|.|:..||      .|.|..:|    :..||:|
  Rat   196 PGERSFHSFYQLLQGGSEQMLHSLHLQKSLSSYNYIRVGAQLKSSINDAAEFKV----VADAMKV 256

  Fly   396 LGVSEGEREGIVRVLAAVLHLGNVYFHRRQLRHGQEG-VEVGSDAEIKWAAHLLHISADGLHRAL 459
            :|....|.:.:.::|||:|||||:.|    :..|... :|.|....:  .|.||...||.:.:||
  Rat   257 IGFKPEEIQTVYKILAAILHLGNLKF----IVDGDTPLIENGKVVSV--IAELLSTKADMVEKAL 315

  Fly   460 TSRTTEAR---AERLHTPLGIDQALDARDAFAKALYAGLFNWLVSRINSIVQ-KGGTHDAHR--- 517
            ..||....   .::.||.   .:|...|||||||:|..||.|:|:|||.|:: |......|.   
  Rat   316 LYRTVATGRDIIDKQHTE---QEASYGRDAFAKAIYERLFCWIVTRINDIIEVKNYDTTVHGKNT 377

  Fly   518 -ISILDIFGFEDLAENSFEQLCINYANENLQLYFNKHVFKLEQAEYARERLEWTPLAWDDNLPVI 581
             |.:|||:|||....|||||.||||.||.||..|.:.|.|.||.||.||.:.|..:.:.:|..::
  Rat   378 VIGVLDIYGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLKQEQEEYQREGIPWKHIDYFNNQIIV 442

  Fly   582 HLLAKKPVGICHLLDDE-SNFPRATDLSFLEKC------HYNHALSELYARPRI--GAQEFGVTH 637
            .|:.::..||..:|||. .|..:.||..|||..      |.:.:..:..|..:|  ..::|.:.|
  Rat   443 DLVEQQHKGIIAILDDACMNVGKVTDGMFLEALNSKLGKHGHFSSRKTCASDKILEFDRDFRIRH 507

  Fly   638 YAGQVWYCVDGFLDKNRDALRGDVLELLASSRLPLVGELTKQLRAQRDAGKTLPKGS-NGRFVTM 701
            |||.|.|.|.||:|||:|.|..|...|:.:|..|::..:             .|:|. :...||.
  Rat   508 YAGDVVYSVIGFIDKNKDTLFQDFKRLMYNSSNPVLKNM-------------WPEGKLSITEVTK 559

  Fly   702 KPRTPTVAARFADSLQQLLQSMGRCHPWFVRCIKPNQEKHALRMDMPCVLQQLRYLGMLDTIQIR 766
            :|.  |.|..|.:|:..|:.::....|::|||||||.:|.....|......|:.|||:|:.:::|
  Rat   560 RPL--TAATLFKNSMIALVDNLASKEPYYVRCIKPNDKKSPQIFDDERCRHQVEYLGLLENVRVR 622

  Fly   767 QRGYPVRLRFQHFVERYR---------HLLPSPLARGTPYRELCRALLEAMPRTGVEGPDYQLGA 822
            :.|:..|..::.|:.||:         |.|||.       :|..:.|:|   |.|.: .|...|.
  Rat   623 RAGFAFRQTYEKFLHRYKMISEFTWPNHDLPSD-------KEAVKKLIE---RCGFQ-DDVAYGK 676

  Fly   823 TRVFLREALHRALESGRT----ERLRRAAVSVQRHVRGMLVRRQLARRQAAATRLQARWRGQRAQ 883
            |::|:|        :.||    |.||..          ||||..|.        ||..|||..|:
  Rat   677 TKIFIR--------TPRTLFTLEELRAQ----------MLVRVVLF--------LQKVWRGTLAR 715

  Fly   884 QRYERLRKGALTAQRLWRGRQARRRVQQLRSDHRRRQEAREAAQRA---------REAREAKQAV 939
            .||:| .|.|||..|.:|..:.:..:.::.......:..|:..:..         |...||.|::
  Rat   716 MRYKR-TKAALTIIRYYRRYKVKSYIHEVARRFHGVKNMRDYGKHVKWPTPPKVLRRFEEALQSI 779

  Fly   940 LERSQLSYL--DIPA-ELAFIYSKLQGWSPPHGDRHLV--------KVLGTVPGPPSSA---VQL 990
            ..|.:.|.|  .||| :|..:.:|:.......|.|..:        ..|.:.|..|.::   |.:
  Rat   780 FNRWRASQLIKTIPASDLPQVRAKVAAMEMLKGQRADLGLQRAWEGNYLASKPDTPQTSGTFVPV 844

  Fly   991 PEDLGQ--------FS-----FGKFSSVYCNGL--------RLQPRRE---PITAPLLTRAASRD 1031
            ..:|.:        ||     ..:||.|....:        ::.|.::   ..|.||........
  Rat   845 ANELKRKDKYMNVLFSCHVRKVNRFSKVEDRAIFVTDRHLYKMDPTKQYKVMKTIPLYNLTGLSV 909

  Fly  1032 QDFQDALAVFK-------LILRWSNDKALEGAKEKLLADYIVHKALSSRGLRDEILVQLCNQVHG 1089
            .:.:|.|.||.       ::..:|.....|....:|:...:.|.....|.|:..:...:...:||
  Rat   910 SNGKDQLVVFHTKDNKDLIVCLFSKQPTHESRIGELVGVLVNHFKSEKRHLQVNVTNPVQCSLHG 974

  Fly  1090 LPPNSGEATRLWQLLGQCLCCFQPSAAFSKYLMRFV 1125
            ........|||          .||...|:|....|:
  Rat   975 KKCTVSVETRL----------NQPQPDFTKNRSGFI 1000

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo10ANP_001036269.2 MYSc_Myo15 169..828 CDD:276838 259/698 (37%)
PTZ00121 <828..>943 CDD:173412 31/127 (24%)
MyTH4 1014..1171 CDD:470587 24/122 (20%)
Ubl1_cv_Nsp3_N-like 1178..>1245 CDD:475130
MyTH4 2704..2810 CDD:459939
FERM_B-lobe 2920..3025 CDD:271216
FERM_C_MyoXV 3029..3138 CDD:270022
Myo1dNP_037115.2 MYSc_Myo1 24..682 CDD:276829 259/697 (37%)
Actin-binding. /evidence=ECO:0000255|PROSITE-ProRule:PRU00782 572..594 8/21 (38%)
Interaction with calmodulin. /evidence=ECO:0000269|PubMed:8034741 776..896 22/119 (18%)
Myosin_TH1 803..996 CDD:461801 36/202 (18%)
Blue background indicates that the domain is not in the aligned region.

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