DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myo10A and Myo1b

DIOPT Version :10

Sequence 1:NP_001036269.2 Gene:Myo10A / 32028 FlyBaseID:FBgn0263705 Length:3145 Species:Drosophila melanogaster
Sequence 2:XP_038938878.1 Gene:Myo1b / 117057 RGDID:70994 Length:1147 Species:Rattus norvegicus


Alignment Length:843 Identity:309/843 - (36%)
Similarity:465/843 - (55%) Gaps:76/843 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 ARQDLGSS------GVEDMTLLDDLHEASLLWNLRLRYDKGLIYTFAGSILIAVNPYKMFPDAYG 206
            |::::.||      ||.|..||:.|:|.:.:.||:.|:|...|||:.||::|:||||:..| .|.
  Rat     2 AKKEVKSSLLDNMIGVGDTVLLEPLNEETFIDNLKKRFDHNEIYTYIGSVVISVNPYRSLP-IYS 65

  Fly   207 LEVAKQYAGRPLGSLPPHLFAIGAAAHAAL---PSPQVVVISGESGSGKTESTKLVMQYLAAVVP 268
            .|..:.|..|....|.||:||:...|:.:|   ...|.::|:||||:||||::||||.|:|||. 
  Rat    66 PEKVEDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVAAVC- 129

  Fly   269 GGGSASAVITEQILEAAPLLEAFGNARTARNDNSSRFGKYLEVYFK-SGAIVGAKITQYLLEKSR 332
            |.|:....:.||:|::.|:|||||||:|.|||||||||||:::.|. .|..:|..|:.|||||||
  Rat   130 GKGAEVNQVKEQLLQSTPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISNYLLEKSR 194

  Fly   333 IVTQAPGERNYHVFYELLGGLSE---------TERSKYGL-LEAD--KYFYLN------QGATDC 379
            :|.|..||||:||||:||.|.||         :|...:.| ||.|  :|.||:      .|..|.
  Rat   195 VVKQPRGERNFHVFYQLLSGASEELLRKSMGASEELLHKLKLERDFSRYNYLSLDSAKVNGVDDA 259

  Fly   380 ASGRVDWESLQGAMQVLGVSEGEREGIVRVLAAVLHLGNVYFHRRQLRHGQEGVEVGSDAEIKWA 444
            |:.|    :::.|||::|.|:.|.|.::.|:||||.|||:.|......:|.:..::....|:|..
  Rat   260 ANFR----TVRNAMQIVGFSDPEAESVLEVVAAVLKLGNIEFKPESRMNGLDESKIKDKNELKEI 320

  Fly   445 AHLLHISADGLHRALTSRTTEARAERLHTPLGIDQALDARDAFAKALYAGLFNWLVSRINSIVQK 509
            ..|..|....|.||.:.||.||:.|::.|.|.:.||..||||.||.||:.||:|||:|||..: |
  Rat   321 CELTSIDQVVLERAFSFRTVEAKQEKVSTTLNVAQAYYARDALAKNLYSRLFSWLVNRINESI-K 384

  Fly   510 GGTHDAHRI-SILDIFGFEDLAENSFEQLCINYANENLQLYFNKHVFKLEQAEYARERLEWTPLA 573
            ..|....:: .:|||:|||...:|||||..|||.||.||..|.:...|.||.||.||.:|||.:.
  Rat   385 AQTKVRKKVMGVLDIYGFEIFEDNSFEQFIINYCNEKLQQIFIELTLKEEQEEYIREDIEWTHID 449

  Fly   574 WDDNLPVIHLLAKKPVGICHLLDDESNFP-RATDLSFLEKCH-----YNHALSELYARPR----- 627
            :.:|..:..|:.....||..:||:|...| ..||.:||||.:     :.|..|.:....|     
  Rat   450 YFNNAIICDLIENNTNGILAMLDEECLRPGTVTDETFLEKLNQVCATHQHFESRMSKCSRFLNDT 514

  Fly   628 -IGAQEFGVTHYAGQVWYCVDGFLDKNRDALRGDVLELLASSRLPLVGELTKQLRAQRDAGKTLP 691
             :....|.:.||||:|.|.|:||:|||.|.|..|:.:.:..:...|:..|             .|
  Rat   515 TLPHSCFRIQHYAGKVLYQVEGFVDKNNDLLYRDLSQAMWKAGHALIKSL-------------FP 566

  Fly   692 KGSNGRFVTMKPRTPTVAARFADSLQQLLQSMGRCHPWFVRCIKPNQEKHALRMDMPCVLQQLRY 756
            :|:..: |.:| |.||..::|..|:..|::::...:|.::||||||.:|.|.......|..|:||
  Rat   567 EGNPAK-VNLK-RPPTAGSQFKASVATLMKNLQTKNPNYIRCIKPNDKKAAHIFSESLVCHQIRY 629

  Fly   757 LGMLDTIQIRQRGYPVRLRFQHFVERYRHLLPS--PLARGTPYRELCRALLEAMPRTGVEGPDYQ 819
            ||:|:.:::|:.||..|..::..:|||:.|...  |..:| |.|.....|...:.   :...:|.
  Rat   630 LGLLENVRVRRAGYAFRQAYEPCLERYKMLCKQTWPHWKG-PARSGVEVLFNELE---IPVEEYS 690

  Fly   820 LGATRVFLR--EALHRALESGRTERLRRAAVSVQRHVRGMLVRRQLARRQAAATRLQARWRGQRA 882
            .|.:::|:|  ..|.: ||..|.:||...|..:|:..||...|......:.:...:.|.:|....
  Rat   691 FGRSKIFIRNPRTLFQ-LEDLRKQRLEDLATLIQKIYRGWKCRTHFLLMKRSQVVIAAWYRRYAQ 754

  Fly   883 QQRYERLRKGALTAQRLWRGRQARRRVQQLRSDHRRRQEAREAAQRAREAREAKQAVLERSQL 945
            |:||::::..||..|...||.:||:.:::|:  |::|  .:|||..........||..||.:|
  Rat   755 QKRYQQIKSSALVIQSYIRGWKARKILRELK--HQKR--CKEAATTIAAYWHGTQARKERRRL 813

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo10ANP_001036269.2 MYSc_Myo15 169..828 CDD:276838 264/695 (38%)
PTZ00121 <828..>943 CDD:173412 33/116 (28%)
MyTH4 1014..1171 CDD:470587
Ubl1_cv_Nsp3_N-like 1178..>1245 CDD:475130
MyTH4 2704..2810 CDD:459939
FERM_B-lobe 2920..3025 CDD:271216
FERM_C_MyoXV 3029..3138 CDD:270022
Myo1bXP_038938878.1 MYSc_Myo1 29..699 CDD:276829 264/695 (38%)
IQ 760..782 CDD:197470 7/21 (33%)
Myosin_TH1 952..1129 CDD:461801
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.