DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43901 and rga1

DIOPT Version :10

Sequence 1:NP_001096948.2 Gene:CG43901 / 32024 FlyBaseID:FBgn0264502 Length:2281 Species:Drosophila melanogaster
Sequence 2:NP_596743.1 Gene:rga1 / 2541022 PomBaseID:SPBC3F6.05 Length:1150 Species:Schizosaccharomyces pombe


Alignment Length:232 Identity:47/232 - (20%)
Similarity:83/232 - (35%) Gaps:58/232 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 SNNSDIRINTSCNNSSNNINNSCNNSSNISCNNSSNTSCNSDNTGDNSATEVATKCEYAQLEH-- 189
            |::.|:.:|.:  |:|:::...|:::....|.......|   :.|..|    .|||:|...|:  
pombe   468 SSSFDMPLNLA--NASSDLCYVCHSALEEDCVLLGEIRC---HIGCLS----CTKCKYNNRENYD 523

  Fly   190 ----ERQSVSAGAYLQPPNVTVSSSSTSSNNNNGKRGSSACSIPTIGSELFKANLVAAAAAAAVV 250
                ..|:.....||        ..:.|||.:|.:...|...:..:...::...:  |......:
pombe   524 WARWNNQTKQIECYL--------CYTESSNVSNDEPHPSFEYVSRLSQYIYLLRI--ALVRLYTI 578

  Fly   251 AAE----QQRQQLH------------------KSASSSSSSQPSTNSGQKLCKLIESSEKSVEIN 293
            ..|    .||:.|.                  ::.:||.|.:...|:...|..|..|..:.    
pombe   579 LMENNDSSQRKPLSVDPKQENVSSTVETAKQAETTASSDSFRKYANTLNDLRHLKSSRNRK---- 639

  Fly   294 CPSPCGIRNVTESGQKSNE--KSSQNVGQTGDDIGSH 328
                 ...|.|:|...|.|  |.|:||.::|.|...|
pombe   640 -----ATSNETQSSSNSTETSKLSKNVSESGKDKSPH 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43901NP_001096948.2 None
rga1NP_596743.1 LIM1_Lrg1p_like 116..172 CDD:188777
LIM2_Lrg1p_like 180..232 CDD:188778
LIM 485..539 CDD:413332 13/68 (19%)
RhoGAP_fLRG1 835..1044 CDD:239862
Blue background indicates that the domain is not in the aligned region.

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