DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1582 and dhx30

DIOPT Version :9

Sequence 1:NP_001285098.1 Gene:CG1582 / 32021 FlyBaseID:FBgn0030246 Length:1288 Species:Drosophila melanogaster
Sequence 2:XP_012820430.2 Gene:dhx30 / 779538 XenbaseID:XB-GENE-5777932 Length:1184 Species:Xenopus tropicalis


Alignment Length:965 Identity:300/965 - (31%)
Similarity:472/965 - (48%) Gaps:155/965 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 KTTCHDIPHELRLRYARHLYKEAKEICRDGIPCVYSICDLLQSNEQLAGRLDTSAFPSPKRSLFY 381
            |...|.:.|:..::..|...::||   |..:|            |.:..|::...:..|....:.
 Frog   311 KPLSHAMYHQPYVQQHREQQRQAK---RFHVP------------EPVLQRIEDYLYQYPLEPPYP 360

  Fly   382 DEPAGGGVNPDAEHHQSPKPSHYARGQTSRND---GGHQRNVEAQTRENRRLLQQFVERRKEERY 443
            .:.....|..|.|:  :|.... |.|  |.||   |...|.:..|  |..|:.....:..:..:.
 Frog   361 SDQTEAYVEADMEY--APDMEE-ASG--SINDAITGRKFRPLSLQ--ETERISCSLRDLWRSRQQ 418

  Fly   444 QKIIDGRKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRALQLPAKENLP 508
            |::  ....||...:.|.|::.||..|||||:|:|||||:|::|||||::...|......     
 Frog   419 QEV--ALMSLPVDGQRESIVSAIERHPVVVIAGDTGCGKTTRIPQFILEDAILRGQGADC----- 476

  Fly   509 HVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKV-SQSTRLSFCTTGILLRRLASD 572
              .::.|||||:||:.||.||..|....:.:.||||:|||:.: .:...|.|||.|:||::|..:
 Frog   477 --NMLITQPRRISAVSVAHRVGHELGPTLRRNVGYQVRLESMLPPRGGALLFCTVGVLLKKLQGN 539

  Fly   573 PLLGSVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNAALFSDYFGGAPVLDIP 637
            |.|..|:|::|||||||...:||||::||.:.::...|||:|||||.:....|.||||.|::.:|
 Frog   540 PTLEGVSHILVDEVHERDVNTDFLLILLKMVQQQNPKLKVVLMSATGDNERISRYFGGCPIIRVP 604

  Fly   638 GRTFPVQQLFLEDILEMSDFVMEYDTKYCRKLKKQEQEILERELEYADVQASGEAPGKKIKDEKL 702
            |..:||::.:|||:..|..                                        ...::|
 Frog   605 GFMYPVKEHYLEDVAAMLG----------------------------------------TSADQL 629

  Fly   703 TLAETYQRYAEYSKPTCKSIYLMEPMTINPELIESVLKYIVEGSHDWPREGTILIFLPGFGEIQS 767
            |.|:                  ||....:.:||.|.:.:|.:..    ..|.||.||||:.||:.
 Frog   630 TPAD------------------MEECVPDLDLISSAILHIADNG----PPGGILCFLPGWQEIRG 672

  Fly   768 VHDSLLDNALFSPRAGKFILVPLHSALSGEDQALVFKKAPPGKRKIVLSTNIAETSVTIDDCVFV 832
            |...|.:...::..  .|:::|:||.:...||..:|::.|.|.|||||:||||||||||||.|.|
 Frog   673 VQQRLEEKQQWAKE--NFLILPVHSNIPMMDQQSIFQRPPQGVRKIVLATNIAETSVTIDDIVHV 735

  Fly   833 VDCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGVCIHLYTSYRYQYHILAQ-PVP 896
            ||.|:.||:.:|....:..|:..|||::|..||:|||||..||...||:|  |.|:..:|. .||
 Frog   736 VDSGMQKEQRYDLRTKVSCLETSWVSKSNVTQRRGRAGRCQPGFSYHLFT--REQHKAMATFQVP 798

  Fly   897 EIQRVPLEQIVLRIKTLQTFASRNTLSVLLETLEAPTEDSVLGALTRLRDVGALDAEDQLTPLGH 961
            ||.|.|||.:||:.|.  .......:..|.:.||:|...::..|:..|:::..||:|:|||.|||
 Frog   799 EILRTPLENLVLQAKV--HVPEMTAVEFLSQALESPESQAITDAVQLLQEIRVLDSEEQLTLLGH 861

  Fly   962 HLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSPLNKRTEADKCKR-MFALGNSDH 1025
            .::.:..|.::.|.::..:||:||..:|.|.|||: :.||...|..|.:.::.|: :.|...|||
 Frog   862 RVSNISTDPKLAKAIVLASIFRCLHPMLVIVACLT-RDPFQGGLQNRAQVNRAKKALSAETRSDH 925

  Fly  1026 LTVLNAYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLKYQ-----YLELLVSIGFVPIDV 1085
            |..:.|.:.|.:|..|.|..|..|:...:.||...|..|..|..|     |...|||        
 Frog   926 LAYVRALQGWEEVLSRRNGTARENFLETYSLSPGALRFIQGLVTQFSSNVYDAFLVS-------- 982

  Fly  1086 PRRRKNACDNILTLTGVEQNHNGDNNRLLTSLLCAALYPNIVKIMTPDRVYIQTAGGAVPREPSH 1150
               ..:.|.:..:|.    |.......||.::|.|.||||:|::.   |.:: :.|...|     
 Frog   983 ---EASECRDGYSLC----NQFSHEEELLKAVLLAGLYPNLVQVR---RGFV-SKGKFKP----- 1031

  Fly  1151 HDLRFKTRGDGYVKIHPSSVNSQVSVFQAPFLVFQEKVRT-SAIYIRDCSMLPLIAMVLFA---- 1210
            :.|.:||| :|.|.:|.:::|.......:|:|.:...|:: .::::||.||:..:|::|.|    
 Frog  1032 NSLLYKTR-EGPVLLHRTTINRDEKHLPSPWLTYFLAVKSGGSVFVRDSSMVHPLAVLLLADSSV 1095

  Fly  1211 -----GSDFKVELHDGDFLFLLESGWIILKAHDLETAEMVQCLRAEMIKLLEEKI 1260
                 |....|.|.|.| |..|||        |..|..::..||..:.::::..:
 Frog  1096 NLIDRGQQLLVSLCDCD-LLKLES--------DRRTIALLNDLRLALSRMVKRSL 1141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1582NP_001285098.1 UBA_like_SF 123..154 CDD:304366
zf-CCCH 250..272 CDD:279036
RWD <284..360 CDD:283440 8/42 (19%)
HrpA 419..1206 CDD:224557 262/795 (33%)
DEXDc 471..619 CDD:238005 68/148 (46%)
HELICc 781..871 CDD:197757 44/89 (49%)
HA2 948..1029 CDD:214852 30/81 (37%)
OB_NTP_bind 1070..1212 CDD:285018 38/156 (24%)
dhx30XP_012820430.2 HrpA 425..1061 CDD:224557 251/736 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222681at33208
OrthoFinder 1 1.000 - - FOG0000258
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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