DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1582 and dhx30

DIOPT Version :10

Sequence 1:NP_572663.1 Gene:CG1582 / 32021 FlyBaseID:FBgn0030246 Length:1288 Species:Drosophila melanogaster
Sequence 2:XP_012820430.2 Gene:dhx30 / 779538 XenbaseID:XB-GENE-5777932 Length:1184 Species:Xenopus tropicalis


Alignment Length:965 Identity:300/965 - (31%)
Similarity:472/965 - (48%) Gaps:155/965 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 KTTCHDIPHELRLRYARHLYKEAKEICRDGIPCVYSICDLLQSNEQLAGRLDTSAFPSPKRSLFY 381
            |...|.:.|:..::..|...::||   |..:|            |.:..|::...:..|....:.
 Frog   311 KPLSHAMYHQPYVQQHREQQRQAK---RFHVP------------EPVLQRIEDYLYQYPLEPPYP 360

  Fly   382 DEPAGGGVNPDAEHHQSPKPSHYARGQTSRND---GGHQRNVEAQTRENRRLLQQFVERRKEERY 443
            .:.....|..|.|:  :|.... |.|  |.||   |...|.:..|  |..|:.....:..:..:.
 Frog   361 SDQTEAYVEADMEY--APDMEE-ASG--SINDAITGRKFRPLSLQ--ETERISCSLRDLWRSRQQ 418

  Fly   444 QKIIDGRKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRALQLPAKENLP 508
            |::  ....||...:.|.|::.||..|||||:|:|||||:|::|||||::...|......     
 Frog   419 QEV--ALMSLPVDGQRESIVSAIERHPVVVIAGDTGCGKTTRIPQFILEDAILRGQGADC----- 476

  Fly   509 HVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKV-SQSTRLSFCTTGILLRRLASD 572
              .::.|||||:||:.||.||..|....:.:.||||:|||:.: .:...|.|||.|:||::|..:
 Frog   477 --NMLITQPRRISAVSVAHRVGHELGPTLRRNVGYQVRLESMLPPRGGALLFCTVGVLLKKLQGN 539

  Fly   573 PLLGSVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNAALFSDYFGGAPVLDIP 637
            |.|..|:|::|||||||...:||||::||.:.::...|||:|||||.:....|.||||.|::.:|
 Frog   540 PTLEGVSHILVDEVHERDVNTDFLLILLKMVQQQNPKLKVVLMSATGDNERISRYFGGCPIIRVP 604

  Fly   638 GRTFPVQQLFLEDILEMSDFVMEYDTKYCRKLKKQEQEILERELEYADVQASGEAPGKKIKDEKL 702
            |..:||::.:|||:..|..                                        ...::|
 Frog   605 GFMYPVKEHYLEDVAAMLG----------------------------------------TSADQL 629

  Fly   703 TLAETYQRYAEYSKPTCKSIYLMEPMTINPELIESVLKYIVEGSHDWPREGTILIFLPGFGEIQS 767
            |.|:                  ||....:.:||.|.:.:|.:..    ..|.||.||||:.||:.
 Frog   630 TPAD------------------MEECVPDLDLISSAILHIADNG----PPGGILCFLPGWQEIRG 672

  Fly   768 VHDSLLDNALFSPRAGKFILVPLHSALSGEDQALVFKKAPPGKRKIVLSTNIAETSVTIDDCVFV 832
            |...|.:...::..  .|:::|:||.:...||..:|::.|.|.|||||:||||||||||||.|.|
 Frog   673 VQQRLEEKQQWAKE--NFLILPVHSNIPMMDQQSIFQRPPQGVRKIVLATNIAETSVTIDDIVHV 735

  Fly   833 VDCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGVCIHLYTSYRYQYHILAQ-PVP 896
            ||.|:.||:.:|....:..|:..|||::|..||:|||||..||...||:|  |.|:..:|. .||
 Frog   736 VDSGMQKEQRYDLRTKVSCLETSWVSKSNVTQRRGRAGRCQPGFSYHLFT--REQHKAMATFQVP 798

  Fly   897 EIQRVPLEQIVLRIKTLQTFASRNTLSVLLETLEAPTEDSVLGALTRLRDVGALDAEDQLTPLGH 961
            ||.|.|||.:||:.|.  .......:..|.:.||:|...::..|:..|:::..||:|:|||.|||
 Frog   799 EILRTPLENLVLQAKV--HVPEMTAVEFLSQALESPESQAITDAVQLLQEIRVLDSEEQLTLLGH 861

  Fly   962 HLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSPLNKRTEADKCKR-MFALGNSDH 1025
            .::.:..|.::.|.::..:||:||..:|.|.|||: :.||...|..|.:.::.|: :.|...|||
 Frog   862 RVSNISTDPKLAKAIVLASIFRCLHPMLVIVACLT-RDPFQGGLQNRAQVNRAKKALSAETRSDH 925

  Fly  1026 LTVLNAYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLKYQ-----YLELLVSIGFVPIDV 1085
            |..:.|.:.|.:|..|.|..|..|:...:.||...|..|..|..|     |...|||        
 Frog   926 LAYVRALQGWEEVLSRRNGTARENFLETYSLSPGALRFIQGLVTQFSSNVYDAFLVS-------- 982

  Fly  1086 PRRRKNACDNILTLTGVEQNHNGDNNRLLTSLLCAALYPNIVKIMTPDRVYIQTAGGAVPREPSH 1150
               ..:.|.:..:|.    |.......||.::|.|.||||:|::.   |.:: :.|...|     
 Frog   983 ---EASECRDGYSLC----NQFSHEEELLKAVLLAGLYPNLVQVR---RGFV-SKGKFKP----- 1031

  Fly  1151 HDLRFKTRGDGYVKIHPSSVNSQVSVFQAPFLVFQEKVRT-SAIYIRDCSMLPLIAMVLFA---- 1210
            :.|.:||| :|.|.:|.:::|.......:|:|.:...|:: .::::||.||:..:|::|.|    
 Frog  1032 NSLLYKTR-EGPVLLHRTTINRDEKHLPSPWLTYFLAVKSGGSVFVRDSSMVHPLAVLLLADSSV 1095

  Fly  1211 -----GSDFKVELHDGDFLFLLESGWIILKAHDLETAEMVQCLRAEMIKLLEEKI 1260
                 |....|.|.|.| |..|||        |..|..::..||..:.::::..:
 Frog  1096 NLIDRGQQLLVSLCDCD-LLKLES--------DRRTIALLNDLRLALSRMVKRSL 1141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1582NP_572663.1 UBA_like_SF 123..154 CDD:473871
RWD_DHX57 175..367 CDD:467661 9/49 (18%)
zf-CCCH 245..272 CDD:459885
HrpA 452..>1075 CDD:441249 225/630 (36%)
OB_NTP_bind 1114..1212 CDD:400182 29/107 (27%)
dhx30XP_012820430.2 HrpA 425..>975 CDD:441249 224/625 (36%)
OB_NTP_bind 1004..1093 CDD:400182 29/98 (30%)
Blue background indicates that the domain is not in the aligned region.

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