DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1582 and ythdc2

DIOPT Version :9

Sequence 1:NP_001285098.1 Gene:CG1582 / 32021 FlyBaseID:FBgn0030246 Length:1288 Species:Drosophila melanogaster
Sequence 2:XP_004910524.1 Gene:ythdc2 / 779469 XenbaseID:XB-GENE-5881731 Length:1457 Species:Xenopus tropicalis


Alignment Length:1212 Identity:370/1212 - (30%)
Similarity:538/1212 - (44%) Gaps:316/1212 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 PQQPTESDTTKKDSVDE---------------NDNELWFHVEVRFPPGSRYPYEAPFIYLKTTCH 321
            |..|..|...|...:||               :|.:     |:.| |.|....|..||      |
 Frog    57 PANPGRSKGLKDIRIDEEVKIAVNIALEKFRYSDQK-----EMEF-PSSLTSTERAFI------H 109

  Fly   322 DIPHELRL----------RYARHLYKEAKEICRDGIPCVY------SICDLLQSNEQLAGRLDTS 370
            .:...|.|          |......|...|.....:.|..      ::|:|:| ...|..:..|.
 Frog   110 RLAQSLGLVSKSKGKGPNRCLTLKKKNGSEASSSLMSCTLTQNTKKAVCNLIQ-RFPLTNKERTE 173

  Fly   371 AFPSPKRSLFYDEPAGGGVNPDAEHHQSPKPSHYARGQTSRNDGGHQRNVEAQTRENRRLLQQFV 435
            ..|..:|...|        ..:||:.:..|.|....|.                      :.|..
 Frog   174 LLPKTERGNVY--------AIEAENREIGKTSGCLNGG----------------------IPQVP 208

  Fly   436 ERRKEERYQKIIDGRKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRALQ 500
            ::|.|.:|...   |:.||.|.:.|.|:.:|:::.||:|.||||.||:||:|||||||.      
 Frog   209 DKRGESKYDFF---RQSLPVFEKQEDIIRIIKNNKVVLIVGETGSGKTTQIPQFILDNC------ 264

  Fly   501 LPAKENLPHVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKVSQSTRLSFCTTGIL 565
              .|..|| ..|.|||||||:||.|||||||||.:.|||.||||||||::||..|.|:|||.|:|
 Frog   265 --QKNGLP-CRIFCTQPRRLAAISVAERVAAERGEIIGQCVGYQIRLESRVSPKTLLTFCTNGVL 326

  Fly   566 LRRL-ASDPLLGSVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNAALFSDYFG 629
            ||.| ..|..|.::||:||||||||...|||||..|::.::|...||:||.||.|:..||..|||
 Frog   327 LRTLMGGDSTLSAITHIIVDEVHERDRFSDFLLTKLRDAIQEHPTLKLILSSAALDVNLFIRYFG 391

  Fly   630 GAPVLDIPGRTFPVQQLFLEDILEMSDF----VMEYDTK--------------YCRKLK------ 670
            |.||:.|.||.|.|:::||||||..:.:    :::|:.:              |..|.|      
 Frog   392 GCPVIYIQGRPFEVKEMFLEDILRSTGYRNKGMLKYNKEKQCEEKQKTTLTEWYSAKQKNMKPET 456

  Fly   671 ---------KQEQEILE-----------------------RELE--------YAD---------- 685
                     |:|.:||:                       :|::        |.|          
 Frog   457 QRQRSVPAIKEEYDILDDGGDTAFGQMTEKDANCLEPWLIKEIDACLSDIWLYRDKDAFAQLFHL 521

  Fly   686 --------------------VQASGE----------APGKKIKD------------------EKL 702
                                :.|:|:          :.|..|:.                  |.:
 Frog   522 ISTENVSVDYRHSETSATPLMVAAGQGFLSHVEQLISMGANIQSKASNGWMALDWAKHFGQTEVV 586

  Fly   703 TLAETYQRYAE----------YSKPTCKSI----------YLMEPMTINPELIESVLKYIVEGSH 747
            .|.|:|....|          .|.....||          :..:...::.:||..||..|.:.:.
 Frog   587 DLLESYSASLETEDLDENTLVQSDGNDLSIEDRELLKAYHHSFDDEKVDLDLIMHVLFNICQITD 651

  Fly   748 DWPREGTILIFLPGFGEIQSVHDS-LLDNALFSPRAGKFILVPLHSALSGEDQALVFKKAPPGKR 811
                .|.|||||||:.||..:.|. |||:..|:..|.::.:..|||.:...||..|.|..|.|.|
 Frog   652 ----TGAILIFLPGYDEIVGLRDRILLDDKRFADNAQRYHVFMLHSNMQTSDQKKVLKLPPAGIR 712

  Fly   812 KIVLSTNIAETSVTIDDCVFVVDCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGV 876
            ||:|||||||||:|::|.|||:|.|.:|||.||:..|:..|.:||:|:|:|.||||||||..||:
 Frog   713 KIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNNVTMLKMVWISKASAIQRKGRAGRCRPGI 777

  Fly   877 CIHLYTSYRYQYHILAQPVPEIQRVPLEQIVLRIKTLQTFASRNTLSVLLETLEAPTEDSVLGAL 941
            |..|::..|:| ::|....||:.|:||.::.|..|.|... :......|::..|.|....|..|:
 Frog   778 CFRLFSKLRFQ-NMLEFQTPELLRIPLHELCLHTKLLVPI-NCPVADFLMKAPEPPPALIVRNAV 840

  Fly   942 TRLRDVGALDAEDQLTPLGHHLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSP-- 1004
            ..|:.:.|:|..:.||.:|||||.|||:..:||::|...|.:|||.:||||..|:.:.|||.|  
 Frog   841 QMLKTIDAMDNWEDLTEIGHHLADLPVEPHLGKMVLCAVILKCLDPILTIACTLAYRDPFVLPSQ 905

  Fly  1005 LNKRTEADKCKRMFALGN-SDHLTVLNAYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLK 1068
            .:::..|..|::.|..|. |||:.:|.|::.|......|   ..|.:..::|||..|:|.|..|:
 Frog   906 ASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQKAKSDG---WERAFCEKNFLSQATMEIIIGLR 967

  Fly  1069 YQYLELLVSIGFVPIDVPRRRKNACDNILTLTGVEQNHNGDNNRLLTSLLCAALYPNIVKIMTPD 1133
            .|.|..|.:.|||      |.:...|    :..|  |.|.:|..::.:.|.:.:|||::.:   |
 Frog   968 TQLLGQLRASGFV------RARGGGD----IRDV--NINSENWAVVKAALLSGMYPNLIHV---D 1017

  Fly  1134 RVYIQTAGGAVPREPSHHDLRFKTRGDGYVKIHPS------------SVNSQVSVFQA---PFLV 1183
            |..:..:|....|                |:.|||            |.|.|....||   .:||
 Frog  1018 RENMVLSGVKEKR----------------VRFHPSSALSEPQYKKIPSANCQAEAVQALPTDWLV 1066

  Fly  1184 FQEKVRTSAI-YIRDCSMLPLIAMVLFAG------------SDFKV-----------ELHDGDFL 1224
            :.|..|:..| .|:.||::..:..|||||            |.|:|           |:.|.:..
 Frog  1067 YDEMTRSHRIANIKCCSVVTPVTAVLFAGPARLPSSALKEPSSFQVGDGIPNDSSDSEMEDRNTF 1131

  Fly  1225 FLLE---SGWIILKAHDLETAEMVQCLRAEMIKLLEEKIRDP 1263
            .|..   ..|:..:. |.|.|.::..||.:...|...:|:.|
 Frog  1132 TLATLKLDEWLHFRL-DPEAAGLLFQLRQKWQSLFLRRIQAP 1172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1582NP_001285098.1 UBA_like_SF 123..154 CDD:304366
zf-CCCH 250..272 CDD:279036 370/1212 (31%)
RWD <284..360 CDD:283440 20/106 (19%)
HrpA 419..1206 CDD:224557 316/949 (33%)
DEXDc 471..619 CDD:238005 88/148 (59%)
HELICc 781..871 CDD:197757 47/89 (53%)
HA2 948..1029 CDD:214852 35/83 (42%)
OB_NTP_bind 1070..1212 CDD:285018 42/169 (25%)
ythdc2XP_004910524.1 R3H_DEXH_helicase 76..134 CDD:100077 12/69 (17%)
HrpA 219..>1046 CDD:224557 299/878 (34%)
ANK repeat 535..567 CDD:293786 4/31 (13%)
ANK repeat 569..600 CDD:293786 5/30 (17%)
OB_NTP_bind 1001..1096 CDD:369483 29/113 (26%)
YTH 1316..1447 CDD:367840
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222681at33208
OrthoFinder 1 1.000 - - FOG0000258
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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