Sequence 1: | NP_001285098.1 | Gene: | CG1582 / 32021 | FlyBaseID: | FBgn0030246 | Length: | 1288 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_004910524.1 | Gene: | ythdc2 / 779469 | XenbaseID: | XB-GENE-5881731 | Length: | 1457 | Species: | Xenopus tropicalis |
Alignment Length: | 1212 | Identity: | 370/1212 - (30%) |
---|---|---|---|
Similarity: | 538/1212 - (44%) | Gaps: | 316/1212 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 272 PQQPTESDTTKKDSVDE---------------NDNELWFHVEVRFPPGSRYPYEAPFIYLKTTCH 321
Fly 322 DIPHELRL----------RYARHLYKEAKEICRDGIPCVY------SICDLLQSNEQLAGRLDTS 370
Fly 371 AFPSPKRSLFYDEPAGGGVNPDAEHHQSPKPSHYARGQTSRNDGGHQRNVEAQTRENRRLLQQFV 435
Fly 436 ERRKEERYQKIIDGRKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRALQ 500
Fly 501 LPAKENLPHVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKVSQSTRLSFCTTGIL 565
Fly 566 LRRL-ASDPLLGSVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNAALFSDYFG 629
Fly 630 GAPVLDIPGRTFPVQQLFLEDILEMSDF----VMEYDTK--------------YCRKLK------ 670
Fly 671 ---------KQEQEILE-----------------------RELE--------YAD---------- 685
Fly 686 --------------------VQASGE----------APGKKIKD------------------EKL 702
Fly 703 TLAETYQRYAE----------YSKPTCKSI----------YLMEPMTINPELIESVLKYIVEGSH 747
Fly 748 DWPREGTILIFLPGFGEIQSVHDS-LLDNALFSPRAGKFILVPLHSALSGEDQALVFKKAPPGKR 811
Fly 812 KIVLSTNIAETSVTIDDCVFVVDCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGV 876
Fly 877 CIHLYTSYRYQYHILAQPVPEIQRVPLEQIVLRIKTLQTFASRNTLSVLLETLEAPTEDSVLGAL 941
Fly 942 TRLRDVGALDAEDQLTPLGHHLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSP-- 1004
Fly 1005 LNKRTEADKCKRMFALGN-SDHLTVLNAYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLK 1068
Fly 1069 YQYLELLVSIGFVPIDVPRRRKNACDNILTLTGVEQNHNGDNNRLLTSLLCAALYPNIVKIMTPD 1133
Fly 1134 RVYIQTAGGAVPREPSHHDLRFKTRGDGYVKIHPS------------SVNSQVSVFQA---PFLV 1183
Fly 1184 FQEKVRTSAI-YIRDCSMLPLIAMVLFAG------------SDFKV-----------ELHDGDFL 1224
Fly 1225 FLLE---SGWIILKAHDLETAEMVQCLRAEMIKLLEEKIRDP 1263 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG1582 | NP_001285098.1 | UBA_like_SF | 123..154 | CDD:304366 | |
zf-CCCH | 250..272 | CDD:279036 | 370/1212 (31%) | ||
RWD | <284..360 | CDD:283440 | 20/106 (19%) | ||
HrpA | 419..1206 | CDD:224557 | 316/949 (33%) | ||
DEXDc | 471..619 | CDD:238005 | 88/148 (59%) | ||
HELICc | 781..871 | CDD:197757 | 47/89 (53%) | ||
HA2 | 948..1029 | CDD:214852 | 35/83 (42%) | ||
OB_NTP_bind | 1070..1212 | CDD:285018 | 42/169 (25%) | ||
ythdc2 | XP_004910524.1 | R3H_DEXH_helicase | 76..134 | CDD:100077 | 12/69 (17%) |
HrpA | 219..>1046 | CDD:224557 | 299/878 (34%) | ||
ANK repeat | 535..567 | CDD:293786 | 4/31 (13%) | ||
ANK repeat | 569..600 | CDD:293786 | 5/30 (17%) | ||
OB_NTP_bind | 1001..1096 | CDD:369483 | 29/113 (26%) | ||
YTH | 1316..1447 | CDD:367840 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D222681at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000258 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |