DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1582 and Dhx34

DIOPT Version :9

Sequence 1:NP_001285098.1 Gene:CG1582 / 32021 FlyBaseID:FBgn0030246 Length:1288 Species:Drosophila melanogaster
Sequence 2:NP_001258381.1 Gene:Dhx34 / 684903 RGDID:1584452 Length:1143 Species:Rattus norvegicus


Alignment Length:1057 Identity:327/1057 - (30%)
Similarity:462/1057 - (43%) Gaps:304/1057 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 RLRYARHLYKEAKEICRD------------GIPCVYSICDLLQSNEQLAGRLDTSAFPSPKRSLF 380
            ||:..:||....||  :|            .:||.|.  ...:.|..:.|. ||.....|     
  Rat    68 RLQKYQHLKTSQKE--KDPGQPKHGIAALADLPCTYD--PRYRINLSILGP-DTRGRHGP----- 122

  Fly   381 YDEPAGGGVNPDAEHHQSPKPSHYARGQTSRNDGGHQRNVEAQTRENRRLLQQFVERRKEE---R 442
                 |.|:.|:                              :..|.||.|..:::.::::   |
  Rat   123 -----GKGLPPE------------------------------RVSEFRRALLHYLDFQQKQAFGR 152

  Fly   443 YQKIIDGRKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRALQLPAKENL 507
            ..|:...|..||......|||..::...|||::|:|||||||||||::|...|            
  Rat   153 LAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGF------------ 205

  Fly   508 PHVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKVSQSTRLSFCTTGILLRRLASD 572
            .||  .||||||::.|.:|:||..|.|.:.|..||||||.|:..|.:|::.|.|.|:|||::..:
  Rat   206 SHV--ACTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQCE 268

  Fly   573 PLLGSVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNAALFSDYFGGAPVLDIP 637
            |.|.....:||||||||...:||||.:|:.||.:|.||||||||||:|.:|||.||..|||:.:|
  Rat   269 PRLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSHAPVVQVP 333

  Fly   638 GRTFPVQQLFLEDILEMSDFVMEYDTKYCRKLKKQEQEILERELEYADVQASGEAPGKKIKDEKL 702
            ||.||:..::                        |.||        |:..||        |.|||
  Rat   334 GRLFPITVVY------------------------QPQE--------AEQSAS--------KSEKL 358

  Fly   703 TLAETYQRYAEYSKPTCKSIYLMEPMTINPELIESVLKYIVEGSHDWPRE--GTILIFLPGFGEI 765
                                        :|.....||:.|   .:.:|.|  |.:|:||.|..||
  Rat   359 ----------------------------DPRPFLRVLEAI---DNKYPPEERGDLLVFLSGMAEI 392

  Fly   766 QSVHDSLLDNALFSPRAGKFILVPLHSALSGEDQALVFKKAPPGKRKIVLSTNIAETSVTIDDCV 830
            .:|.|:....|..:.|   ::::|||||||..||..||..||.|.||.:|||||||||||||...
  Rat   393 STVLDAAQAYATLTQR---WVVLPLHSALSVADQDKVFDVAPAGVRKCILSTNIAETSVTIDGIR 454

  Fly   831 FVVDCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGVCIHLYTSYRYQYHILAQPV 895
            ||||.|.:||..:|....::.|...|:|:|:|:||||||||..||||..||....|. .....||
  Rat   455 FVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAESDYD-AFAPYPV 518

  Fly   896 PEIQRVPLEQIVLRIKTLQTFASRNTLSVLLETLEAPTEDSVLGALTRLRDVGALDAEDQLTPLG 960
            |||:||.|:.:||::|::.....|.     ...:|.|...||..|:..|:|.||||:.:.|||:|
  Rat   519 PEIRRVALDALVLQMKSMSVGDPRT-----FPFIEPPPAASVETAILYLQDQGALDSSEALTPIG 578

  Fly   961 HHLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSPLNKRTEADKCKRMFALGNSDH 1025
            ..||.|||||.|||:|:.|::|...:.||||||.||.:|||........:....:|.......|.
  Rat   579 SLLAQLPVDVVIGKMMILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLDCATARRPLESDQGDP 643

  Fly  1026 LTVLNAYRKWLDV--ARRGNYAASRNYASEHFLSLNTLETIADLKYQYLELLVSIGFV------- 1081
            .|:.|.:..|:.|  .|.||   ||.:.....:..:.|..:|:|:.|:.|||...|.:       
  Rat   644 FTLFNVFNAWVQVKSERSGN---SRKWCRRRGVEEHRLYEMANLRRQFKELLEDHGLLRGAQVVA 705

  Fly  1082 PIDV------------------------PRRRK------NACDNILTLTGVEQNHNG-------- 1108
            |.|.                        .||||      :.|.:       :::|.|        
  Rat   706 PRDSYSRLQQRRERQTLHQLKRQHEEGGGRRRKVLRLQEDGCSS-------DEDHEGSASQRADS 763

  Fly  1109 -----------------------------DNNRLLTSLLCAALYPNIVKIMTPDRVYIQTAGGAV 1144
                                         |...||..:|...|||.:                ||
  Rat   764 VDIQDVKFKLRHNLEQLQAAASSAQDLTRDQLALLKLVLGRGLYPQL----------------AV 812

  Fly  1145 P------REPSHHDLRFKTRGDGYVKIHPSSV--NS-QVSVFQAP-------------------- 1180
            |      |:.|  |..|.|:......:||:.|  || :|...|.|                    
  Rat   813 PDAFNSGRKDS--DQIFHTQAKQGTVLHPTCVFANSPEVLHTQGPEASGREGSQDGKDQMSCKHQ 875

  Fly  1181 FLVFQEKVRTSAIYIRDCSMLP-LIAMVLFAGSDFKVELHDGDFLFLLESGWIILKAHDLETAEM 1244
            .|.|...:.|:..|:.:|..:| |.:::||:.|   ::. :||...|:..||:.|:..|.|:|  
  Rat   876 LLAFVSLLETNKPYLVNCVRIPALQSLLLFSRS---IDT-NGDCSRLVADGWLELQLADSESA-- 934

  Fly  1245 VQCLRAEMIKLLEEKIR 1261
                    ::||...:|
  Rat   935 --------VRLLATSLR 943

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1582NP_001285098.1 UBA_like_SF 123..154 CDD:304366
zf-CCCH 250..272 CDD:279036
RWD <284..360 CDD:283440 10/43 (23%)
HrpA 419..1206 CDD:224557 294/897 (33%)
DEXDc 471..619 CDD:238005 74/147 (50%)
HELICc 781..871 CDD:197757 49/89 (55%)
HA2 948..1029 CDD:214852 35/80 (44%)
OB_NTP_bind 1070..1212 CDD:285018 46/245 (19%)
Dhx34NP_001258381.1 HrpA 155..>687 CDD:224557 245/628 (39%)
OB_NTP_bind 798..909 CDD:400182 31/131 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222681at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.