DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1582 and dhx9

DIOPT Version :9

Sequence 1:NP_001285098.1 Gene:CG1582 / 32021 FlyBaseID:FBgn0030246 Length:1288 Species:Drosophila melanogaster
Sequence 2:NP_001188373.1 Gene:dhx9 / 568043 ZFINID:ZDB-GENE-070912-171 Length:1270 Species:Danio rerio


Alignment Length:943 Identity:326/943 - (34%)
Similarity:486/943 - (51%) Gaps:148/943 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   373 PSPKRSLFYDEPAGGGVNPDAEHHQSPKPSHYARGQTSRNDGGHQRNVEAQTRENRRLLQQFVER 437
            ||.::|:       .||.|     .||...::....:|..|.|.......:...|..|.:...:.
Zfish   327 PSQRQSM-------AGVVP-----WSPPQVNWNPWTSSNIDEGPLAFCTPEQISNDLLNELNYQL 379

  Fly   438 RKEERYQKIIDGRKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRALQLP 502
            .:::..|.|:..|.|||.....|:|::.|.::|||:|.|.|||||:|||||:|||. |.:.    
Zfish   380 EQDQNLQTILTERSQLPVKNFQEQIMSTIYNNPVVIIRGATGCGKTTQVPQYILDE-FIKG---- 439

  Fly   503 AKENLPHVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKVSQ-STRLSFCTTGILL 566
              .......|:.|||||:||:.|||||:.||.:.:|:..||.:|.|:.:.: ...:.|||.|:||
Zfish   440 --GRASDCNIVVTQPRRISAVSVAERVSFERGEDVGKSCGYSVRFESFLPRPHASILFCTVGVLL 502

  Fly   567 RRLASDPLLGSVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNAALFSDYFGGA 631
            |:|.|.  :..::||||||:|||...:||||::|:::::...|::|||||||::..:|.:||...
Zfish   503 RKLESG--IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPDVRVILMSATIDTTMFKEYFFNC 565

  Fly   632 PVLDIPGRTFPVQQLFLEDILEMSDFV---MEYDTKYCRKLKKQEQEILERELEYADVQASGEAP 693
            ||:::.||..|||:.||||.::|:.||   |:      ||.|.::.|..:.::....:..|    
Zfish   566 PVIEVHGRAHPVQEYFLEDCIQMTQFVPPPMD------RKRKDKDDEGGDEDVNCNVICGS---- 620

  Fly   694 GKKIKDEKLTLAETYQRYAEYSKPTCKSIYLMEPMTINPELIESVLKYIVEGSHDWPREGTILIF 758
                               |||..|.:::..:.....:.||||::||||  .:.:.|  |.:|:|
Zfish   621 -------------------EYSPETKRAMSQLNEKETSFELIEALLKYI--ETLEVP--GAVLVF 662

  Fly   759 LPGFGEIQSVHDSLLDNALFSPRAGKFILVPLHSALSGEDQALVFKKAPPGKRKIVLSTNIAETS 823
            |||:..|.|:...|..|..|.  ..::.::||||.:..|:|..||:..|.|..|::|||||||||
Zfish   663 LPGWNLIYSMQKHLEMNPHFG--GHQYRILPLHSQIPREEQRRVFEPVPDGVTKVILSTNIAETS 725

  Fly   824 VTIDDCVFVVDCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGVCIHLYTSYRYQY 888
            :||:|.|||:|....|.|.|.|:.||.:...||.|:.|.:|||||||||.||.|.||.:..|:: 
Zfish   726 ITINDVVFVLDSCKQKVKLFTSHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFE- 789

  Fly   889 HILAQPVPEIQRVPLEQIVLRIKTLQTFASRNTLSVLLETLEAPTEDSVLGALTRLRDVGALDAE 953
            .:.....|||.|.||.::.|.||.|:.....|.||   :.:|.|..|:|:.|...||::.|||:.
Zfish   790 KLETHMTPEIFRTPLHEVALSIKLLRLGGIGNFLS---KAIEPPPLDAVIEAEHTLRELDALDSN 851

  Fly   954 DQLTPLGHHLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSPLNKRTEADKCKRMF 1018
            |:|||||..||.||::.|:||:|:.|.||...|:|.||:|......||:|. .||  .....|.|
Zfish   852 DELTPLGRILAKLPIEPRLGKMMIMGCIFNVGDAVCTISAATCFPEPFISE-GKR--LGFVHRNF 913

  Fly  1019 ALGN--SDHLTVLNAYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLKYQYLELLVSIGFV 1081
            | |:  |||:.:|:.::.| |..|.|...|...:.....|::.||....:.|.|..|:||::|| 
Zfish   914 A-GSRFSDHVALLSVFQAW-DEVRVGGEDAEIRFCEHKRLNMPTLRMTWEAKVQLKEILVNVGF- 975

  Fly  1082 PIDVPRRRKNACDNILTLTGVEQNHNGDNN-RLLTSLLCAALYPNIV------KIMTPDRVYIQT 1139
                    ...|    .|..|..|...||| .|:.|||....|||:.      ||:|        
Zfish   976 --------PEEC----LLNQVFNNVGPDNNLDLVISLLTFGSYPNVCYHKEKRKILT-------- 1020

  Fly  1140 AGGAVPREPSHHDLRFKTRGDGYVKIHPSSVNSQVS----VFQAPFLVFQEKVRTSAIYIRDCSM 1200
                             |.|...: ||.||||...|    .:.:||.||.||:||.||..:..::
Zfish  1021 -----------------TEGRNAL-IHKSSVNCPFSNHDLKYPSPFFVFGEKIRTRAISAKSMTL 1067

  Fly  1201 LPLIAMVLFAGSDFK-----VELHDGDFLFLLESGWIILK-AHDLETAEMVQCLRAEMIKLLEEK 1259
            :..:.::||......     |||.|          ||.|: .||:  |..|..|||.:..|:.|.
Zfish  1068 VSPLQLILFGSKKITSNGEVVELDD----------WIKLQIPHDV--AAGVAGLRAGLEALVVEV 1120

  Fly  1260 IRDP----CLNLLHHKNGCRMIANIVHLISKNS 1288
            .:||    .|:.|:.:     :.|::.|:|:.|
Zfish  1121 TKDPEYIRNLDPLNER-----LLNVIRLVSRPS 1148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1582NP_001285098.1 UBA_like_SF 123..154 CDD:304366
zf-CCCH 250..272 CDD:279036
RWD <284..360 CDD:283440
HrpA 419..1206 CDD:224557 289/803 (36%)
DEXDc 471..619 CDD:238005 68/148 (46%)
HELICc 781..871 CDD:197757 43/89 (48%)
HA2 948..1029 CDD:214852 37/82 (45%)
OB_NTP_bind 1070..1212 CDD:285018 44/152 (29%)
dhx9NP_001188373.1 DSRM 5..69 CDD:214634
DSRM 188..258 CDD:214634
DEXDc 400..580 CDD:214692 83/188 (44%)
DEXDc 413..553 CDD:238005 68/148 (46%)
Helicase_C 641..774 CDD:278689 64/138 (46%)
HA2 844..925 CDD:214852 37/84 (44%)
OB_NTP_bind 965..1079 CDD:285018 44/152 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222681at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.