DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1582 and Dhx38

DIOPT Version :9

Sequence 1:NP_001285098.1 Gene:CG1582 / 32021 FlyBaseID:FBgn0030246 Length:1288 Species:Drosophila melanogaster
Sequence 2:XP_006255639.1 Gene:Dhx38 / 292007 RGDID:1310345 Length:1227 Species:Rattus norvegicus


Alignment Length:1348 Identity:333/1348 - (24%)
Similarity:540/1348 - (40%) Gaps:356/1348 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SSR--KHMEDCFLRSPS------------------DIRTTNVPAAPKSQAADNKSRKTELHVLRL 48
            |||  :|.....:.:||                  |.|...|.|:.|    ::|.||.|..  |.
  Rat   103 SSRRDRHYRSARVETPSHPGGVSEEFWERSRQRERDRREHGVYASSK----EDKDRKKEKS--RD 161

  Fly    49 NDESRQMTMDTL-RQIHGPEFQLDDISKYKDRGRGGHGVKH----------SYWQDRGTLVVQSV 102
            .|..|:...|.. |..|....:.|..|:...|.......:|          |.|::..:      
  Rat   162 RDHDRKRDRDERDRSRHSSRSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDS------ 220

  Fly   103 QGVSSTRGND----------SDGDRLRRYALAKLENYGFQAVHCLEAYEHCSGDTEAALLLLYRR 157
             |..|:|.:.          .|.:|..|.:....:.         ......|.||  .|.....:
  Rat   221 -GYGSSRRSQWETPSPTPSYRDSERSHRPSTRDRDR---------SVRSKSSDDT--PLPTPSYK 273

  Fly   158 YMRIPDEEQLTLEPPSEQEILDMRADEKEALESIFDKAYE-------EREANRVWNLKFRID--- 212
            |....|:.:.....|........|.|.:|.:  .||...|       :|:|:|.|   :.:|   
  Rat   274 YNEWADDRRHLGSTPRLSRGRGRREDGEEGI--AFDTEEERQQWEDDQRQADRDW---YMMDEGY 333

  Fly   213 ----HLLAHSPSEVRKAREAVLAAAAAAAQAALDKKKKPPLRCRNFDRDGTCKYGPKCRFAHLPQ 273
                :.||:|..:..:.||..|..         .|:|:...:.|..:.|..       |:.  ..
  Rat   334 DEFHNPLAYSSEDYVRRREQHLHK---------QKQKRISAQRRQINEDNE-------RWE--TN 380

  Fly   274 QPTESDTTKKDSVDEN---DNELWFHVEVR--FPP-------GSRYPYEAPFIYLKTTCHDIPHE 326
            :...|....:..|||:   ||....|:.|.  .||       .::.|  .|.|.:|....|:   
  Rat   381 RMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGRIVFTKQP--EPVIPVKDATSDL--- 440

  Fly   327 LRLRYARHLYKEAKEICRDGIPCVYSICDLLQSNEQLAGRLDTSAFPSPKRSLFYDEPAGGGVNP 391
                         ..|.|.|...|      .:..||...|                         
  Rat   441 -------------AIIARKGSQTV------RKHREQKERR------------------------- 461

  Fly   392 DAEHHQSPKPSHYARGQTSRND-GGHQRNVE---AQTRENR---RLLQQFVERRKEE-------- 441
            .|:|      .|:....|...| .|.::..|   |.|.:.:   |..|:|.:..||:        
  Rat   462 KAQH------KHWELAGTKLGDIMGVKKEEEPDKAMTEDGKVDYRTEQKFADHMKEKSEASSEFA 520

  Fly   442 RYQKIIDGRKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRALQLPAKEN 506
            :.:.|::.|:.||.||..:.:|.:|..:.:|::.||||.||:||:.|::..:.:           
  Rat   521 KKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHQDGY----------- 574

  Fly   507 LPHVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKVSQSTRLSFCTTGILLRRLAS 571
            ..:..|.||||||::|:.||:||:.|....:|:.|||.||.|:..|::|.:.:.|.|||||....
  Rat   575 TDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLR 639

  Fly   572 DPLLGSVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNAALFSDYFGGAPVLDI 636
            :..|...:.:|:||.||||..:|.|..:|:.::..|.|||:|:.|||::|..|:.:||..|:..|
  Rat   640 EADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDADKFAAFFGNVPIFHI 704

  Fly   637 PGRTFPVQQLFLEDILEMSDFVMEYDTKYCRKLKKQEQEILERELEYA-DVQASGEAPGKKIKDE 700
            |||||||..||                     .|..:::.:|..::.: .|..|| ||       
  Rat   705 PGRTFPVDILF---------------------SKTPQEDYVEAAVKQSLQVHLSG-AP------- 740

  Fly   701 KLTLAETYQRYAEYSKPTCKSIYLMEPMTINPELIESVLKYIVEGSHDWPREGTILIFLPGFGEI 765
                                                                |.||||:||..:|
  Rat   741 ----------------------------------------------------GDILIFMPGQEDI 753

  Fly   766 QSVHDSLLDNALFSPRAGKFILVPLHSALSGEDQALVFKKAPPGKRKIVLSTNIAETSVTIDDCV 830
            :...|.::::......|....::|::|.|..:.||.:|:|||.|.||.:::|||||||:|:|..:
  Rat   754 EVTSDQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIM 818

  Fly   831 FVVDCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGVCIHLYTSYRYQYHILAQPV 895
            ||:|.|..|.|.|:....|::|.:..:|:|||.||.|||||..||.|..|||...|:..:|...|
  Rat   819 FVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTV 883

  Fly   896 PEIQRVPLEQIVLRIKTLQTFASRNTLSVLLE--TLEAPTEDSVLGALTRLRDVGALDAEDQLTP 958
            |||||..|..:||.:|:|       .:..||:  .::.|.||::|.::.:|..:||||....||.
  Rat   884 PEIQRTNLANVVLLLKSL-------GVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTS 941

  Fly   959 LGHHLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSPLNKRTEADKCKRMFALGNS 1023
            .|..:...|:|..:.|:::......|...:|.|.:.||..:.|..|..:..|:|:.:..||:..|
  Rat   942 TGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPES 1006

  Fly  1024 DHLTVLNAYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLKYQYLELLVSIGFVPIDVPRR 1088
            ||||.||.|.:|    :..||  |..:.::||:....:..:.:::.|..:::|.        .|.
  Rat  1007 DHLTYLNVYLQW----KNNNY--STIWCNDHFIHAKAMRKVREVRAQLKDIMVQ--------QRM 1057

  Fly  1089 RKNACDNILTLTGVEQNHNGDNNRLLTSLLCAALYPNIVKIM-TPDRVYIQTAGGAVPREPSHHD 1152
            ...:|              |.:..::...:|||.:....|:. ..:.|.|:|.      .|.|  
  Rat  1058 SLASC--------------GTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTG------MPCH-- 1100

  Fly  1153 LRFKTRGDGYVKIHPSSVNSQVSVF----QAPFLVFQEKVRTSAIYIRDCSMLPLIAMVLFAGSD 1213
                        :||:|     |:|    ...::|:.|.|.|:..|:: |        |.....:
  Rat  1101 ------------LHPTS-----SLFGMGYTPDYIVYHELVMTTKEYMQ-C--------VTAVDGE 1139

  Fly  1214 FKVELHDGDFLFLLESGWIILKAHDLETAEMVQCLRAEMIKLLEEKIR 1261
            :..||  |...:.::......:.:.....|....:..|| .|.||::|
  Rat  1140 WLAEL--GPMFYSVKQAGKSRQENRRRAKEEASAMEEEM-ALAEEQLR 1184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1582NP_001285098.1 UBA_like_SF 123..154 CDD:304366 4/30 (13%)
zf-CCCH 250..272 CDD:279036 3/21 (14%)
RWD <284..360 CDD:283440 18/87 (21%)
HrpA 419..1206 CDD:224557 232/808 (29%)
DEXDc 471..619 CDD:238005 56/147 (38%)
HELICc 781..871 CDD:197757 40/89 (45%)
HA2 948..1029 CDD:214852 26/80 (33%)
OB_NTP_bind 1070..1212 CDD:285018 26/146 (18%)
Dhx38XP_006255639.1 DUF3984 <190..>299 CDD:289881 18/126 (14%)
DEXDc 526..713 CDD:214692 77/197 (39%)
DEXDc 551..687 CDD:238005 56/146 (38%)
HELICc 758..861 CDD:197757 43/102 (42%)
HA2 930..1012 CDD:214852 26/81 (32%)
OB_NTP_bind <1063..1146 CDD:285018 24/118 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.