DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1582 and Dhx33

DIOPT Version :9

Sequence 1:NP_001285098.1 Gene:CG1582 / 32021 FlyBaseID:FBgn0030246 Length:1288 Species:Drosophila melanogaster
Sequence 2:NP_001099272.1 Gene:Dhx33 / 287464 RGDID:1307239 Length:698 Species:Rattus norvegicus


Alignment Length:765 Identity:229/765 - (29%)
Similarity:363/765 - (47%) Gaps:164/765 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 RKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRALQLPAKENLPHVEIIC 514
            |:.||.|....::||.:.:....|:.||||.||:||:||::.:...       :::.:    |..
  Rat    62 RRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGI-------SRQGI----IAV 115

  Fly   515 TQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKVSQSTRLSFCTTGILLRRLASDPLLGSVT 579
            |||||::||.:|.||:.|:...:|:||||.:|.|:..|:.||:.|.|.|:|||...||.||...:
  Rat   116 TQPRRVAAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGMLLREAISDSLLRKYS 180

  Fly   580 HVIVDEVHERSEESDFLLLILKNLLRERKD-----LKVILMSATLNAALFSDYFGGAPVLDIPGR 639
            .||:||.|||:..:|.|..::|...:.||:     ||||:||||::..|||.||.|||||.:.||
  Rat   181 CVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNGAPVLYLEGR 245

  Fly   640 TFPVQQLFLEDILEMSDFVMEYDTKYCRKLKKQEQEILERELEYADVQASGEAPGKKIKDEKLTL 704
            ..|:|..:                     .|:.:|:.|...| .:..|...|||           
  Rat   246 QHPIQIFY---------------------TKQPQQDYLHAAL-VSVFQIHQEAP----------- 277

  Fly   705 AETYQRYAEYSKPTCKSIYLMEPMTINPELIESVLKYIVEGSHDWPREGTILIFLPGFGEIQSVH 769
                                                    .|.|      ||:||.|..||:::.
  Rat   278 ----------------------------------------SSQD------ILVFLTGQEEIEAMS 296

  Fly   770 DSLLDNALFSPRAGKFILV-PLHSALSGEDQALVFKKAPPGKRKIVLSTNIAETSVTIDDCVFVV 833
            .:..|.|...|.....:|| ||:::|....|..||:.||.|.||:::||||||||:||....:||
  Rat   297 KTCRDIAKHLPDGCPSMLVLPLYASLPYSQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVV 361

  Fly   834 DCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGVCIHLYTSYRY-QYHILAQPVPE 897
            |.|::|.|.::.:..:|.|.:..||:..|.||.|||||...|:|..|||...: ::..:|  .||
  Rat   362 DTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGREDSGICYRLYTEDEFDKFEKMA--APE 424

  Fly   898 IQRVPLEQIVLRIKTLQTFASRNTLSVLLETLEAPTEDSVLGALTRLRDVGALDAEDQ---LTPL 959
            |||..|..::|::..::.   .|.|:  .:.:..|:.|.:..|:.:|..:|||:.:|.   |||:
  Rat   425 IQRCNLASVMLQLLAMKV---PNVLT--FDFMSRPSPDHIEAAIAQLDLLGALEHKDDQLALTPI 484

  Fly   960 GHHLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSPLNKRTEADKCKRMFALGNSD 1024
            |..:||.|::.:..|.:|..:.|.|.:.:|||.:.||..|...:|..:|.|....::.|.....|
  Rat   485 GRKMAAFPLEPKFAKTILLSSKFHCTEEILTIVSLLSVDSVLYNPPARRDEVQSVRKKFISSEGD 549

  Fly  1025 HLTVLNAYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLKYQYLELLVSIGFVPIDVPRRR 1089
            |:|:||.||.:.::.  ||    :::..|:|::...:..:|:::.|..::.:.:. :||      
  Rat   550 HITLLNIYRTFKNIG--GN----KDWCKENFVNSKNMLLVAEVRAQLRDICLKMS-MPI------ 601

  Fly  1090 KNACDNILTLTGVEQNHNGDNNRLLTSLLCAALYPNIVKIMTPDRVYIQTAGGAVPREPSHHDLR 1154
                          .:..||... :...|..:|:.:..::. ||..|..|        .:|..  
  Rat   602 --------------MSSRGDMES-VRRCLAHSLFMSTAELQ-PDGTYATT--------DTHQP-- 640

  Fly  1155 FKTRGDGYVKIHPSSVNSQVSVFQA-PFLVFQEKVRTSAIYIRDCSMLPL 1203
                    |.||||||     :|.. |..|    |.||.:|...|.|..|
  Rat   641 --------VAIHPSSV-----LFHCKPACV----VYTSLLYTNKCYMRDL 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1582NP_001285098.1 UBA_like_SF 123..154 CDD:304366
zf-CCCH 250..272 CDD:279036
RWD <284..360 CDD:283440
HrpA 419..1206 CDD:224557 229/765 (30%)
DEXDc 471..619 CDD:238005 62/152 (41%)
HELICc 781..871 CDD:197757 39/90 (43%)
HA2 948..1029 CDD:214852 28/83 (34%)
OB_NTP_bind 1070..1212 CDD:285018 29/135 (21%)
Dhx33NP_001099272.1 DEXDc 49..252 CDD:214692 83/200 (42%)
DEXDc 83..225 CDD:238005 62/152 (41%)
Helicase_C 282..399 CDD:278689 49/116 (42%)
HA2 469..554 CDD:214852 28/84 (33%)
OB_NTP_bind 588..688 CDD:285018 29/136 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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