DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1582 and smgl-2

DIOPT Version :9

Sequence 1:NP_001285098.1 Gene:CG1582 / 32021 FlyBaseID:FBgn0030246 Length:1288 Species:Drosophila melanogaster
Sequence 2:NP_001294374.1 Gene:smgl-2 / 177135 WormBaseID:WBGene00021365 Length:1089 Species:Caenorhabditis elegans


Alignment Length:958 Identity:273/958 - (28%)
Similarity:429/958 - (44%) Gaps:227/958 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   433 QFVERRKEERYQKIIDGRKQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFR 497
            ||.:.:|.::.||:...:|:||.......|:.|::::.|::::|:|||||||||||::|...|  
 Worm   124 QFNQHQKFQKLQKLRKLQKELPIAERAGEIVELLKTNQVLIVAGDTGCGKSTQVPQYLLKAGF-- 186

  Fly   498 ALQLPAKENLPHVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKVSQSTRLSFCTT 562
                        ..:.||||||::...:|.|||.|.|::.|..|.:|||.|...||.|:|.|.|.
 Worm   187 ------------TGVACTQPRRIACTALARRVAYETLNQYGSEVAFQIRFETTKSQKTKLLFLTE 239

  Fly   563 GILLRRLASDPLLGSVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNAALFSDY 627
            |:|||::..|.||.....:|:||||||...||.|:.:|::|..:|.|||:||||||:|..||..|
 Worm   240 GLLLRQMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCTKRDDLKLILMSATINLDLFKGY 304

  Fly   628 FGGAPVLDIPGRTFPVQQLF--LEDILEMSDFVMEYDTKYCRKLKKQEQEILERELEYADVQASG 690
            |.||||:.:|||.||:...:  ::..::.||          :|..|.:.|...:.||..|.|.  
 Worm   305 FEGAPVVQVPGRLFPIDVRWHPIKQFIDQSD----------KKTHKIDPEPYLKILELIDKQF-- 357

  Fly   691 EAPGKKIKDEKLTLAETYQRYAEYSKPTCKSIYLMEPMTINPELIESVLKYIVEGSHDWPREGTI 755
                                                |.|                     :.|..
 Worm   358 ------------------------------------PST---------------------QRGDA 365

  Fly   756 LIFLPGFGEIQSVHDSLLDNALFSPRAGKFILVPLHSALSGEDQALVFKKAPPGKRKIVLSTNIA 820
            ||||.|..||..|.:.|.:   ::.....:|::.|||.||.|:|..||.:||.|.||.:||||:|
 Worm   366 LIFLNGVAEISMVAEHLKN---YAELTNGWIILMLHSTLSVEEQDKVFDQAPVGIRKCILSTNVA 427

  Fly   821 ETSVTIDDCVFVVDCGLMKEKCFDSNRNMESLDLVWVSRANAKQRKGRAGRVMPGVCIHLYTSYR 885
            |||||||...||:|.|.:.....:.....:.|...|||:|:|.||||||||..||:|..||:..:
 Worm   428 ETSVTIDGIRFVIDSGKVNLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGICYRLYSQEQ 492

  Fly   886 YQYHILAQPVPEIQRVPLEQIVLRIKTLQTFASRNTLSVLLETLEAPTEDSVLGALTRLRDVGAL 950
            :: .:....|.||.||.|:::.|::.:|.......|...    :|.|:||.:...|..|:....|
 Worm   493 FE-KMDDFTVSEINRVSLQEMALKMISLNLGLDPRTFPF----IEKPSEDVLNEGLEVLKFQRVL 552

  Fly   951 --DAED--QLTPLGHHLAALPVDVRIGKLMLYGAIFQCLDSVLTIAACLSNKSPFVSPLNKRTEA 1011
              |..|  .||.||:.::.|||:|.|.|:::||.:...|:.:||:||.||.:|||.:...:..|.
 Worm   553 RSDRGDILTLTALGNMVSKLPVEVPIAKMLVYGCVVDELEVMLTVAAGLSVQSPFTNRSYRELEI 617

  Fly  1012 DKCKRMFALGNSDHLTVLNAYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLKYQYLELLV 1076
            .:.:........|..|:::.:|:|  |.::.....:|.:..|:.:..:.|..|:.|:.||.::|.
 Worm   618 VERRASLTSPLGDPFTLISIFREW--VLQKAFEGTARRWTMENGIDEHRLYEISKLRAQYRQILE 680

  Fly  1077 SIGFVP----------------IDVPRRRK------------------NA---CDNIL------- 1097
            ..|.|.                ||...:||                  ||   .|.||       
 Worm   681 DAGLVEKASAAETGEDDSRQRRIDQGEKRKLFDLKKSQRNNDRRQKVLNANKHFDKILEDKEEED 745

  Fly  1098 ------------------------TLTGVEQNH--NGDNNRLLTSLLCAALYPNIVKIMTPDRVY 1136
                                    .:..:.:.|  :.....::..::.|.||||. .|:.|...|
 Worm   746 LEAEKDPLKADVKTVEFLLSHKQRDVENIRKTHKISRKTAEVVRVIIAAGLYPNF-SILDPVNKY 809

  Fly  1137 IQTAGGAVPREPSHHDLRFKTRGDGYVKIHPSSVNSQV---------------SVFQAPFLVFQE 1186
                  ...:|...|     ||...:.:|||:|..:|.               .:.|.||  :..
 Worm   810 ------GYGQEMFTH-----TRLKPFTQIHPNSSIAQYHPETIDPRQGSDGFSRLHQIPF--YGL 861

  Fly  1187 KVRTSAIYIRDCSMLP-------LIAMVLFAGSDFKVELHDGDFLFL-----LESGWIILKAHDL 1239
            .:.|:..||  |:::|       |:|..:....|:. :|...|||.|     .:...::|.|.: 
 Worm   862 LLETTKPYI--CNVMPVPAVYTLLVAQKIVIEDDWS-QLSIDDFLELRFRSSTDCRSVLLDAKE- 922

  Fly  1240 ETAEMVQCLRAEMIKLLEEKIRDPCLNLLHHKNGCRMIANIVHLISKN 1287
                    :|.|:.|.|..|:....     ..:|.|.:|..:.|::::
 Worm   923 --------IRYELTKGLAAKLVGEA-----GFSGRRRLAKYIDLLNQS 957

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1582NP_001285098.1 UBA_like_SF 123..154 CDD:304366
zf-CCCH 250..272 CDD:279036
RWD <284..360 CDD:283440
HrpA 419..1206 CDD:224557 255/870 (29%)
DEXDc 471..619 CDD:238005 67/147 (46%)
HELICc 781..871 CDD:197757 43/89 (48%)
HA2 948..1029 CDD:214852 28/84 (33%)
OB_NTP_bind 1070..1212 CDD:285018 42/233 (18%)
smgl-2NP_001294374.1 DEXDc 130..330 CDD:214692 90/213 (42%)
DEXDc 161..296 CDD:238005 67/148 (45%)
Helicase_C 350..480 CDD:278689 61/191 (32%)
HA2 561..635 CDD:214852 25/73 (34%)
OB_NTP_bind <775..888 CDD:285018 28/128 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D222681at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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