DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ork1 and Kcnc4

DIOPT Version :10

Sequence 1:NP_001285097.1 Gene:Ork1 / 32020 FlyBaseID:FBgn0017561 Length:1019 Species:Drosophila melanogaster
Sequence 2:XP_038959057.1 Gene:Kcnc4 / 684516 RGDID:1589169 Length:663 Species:Rattus norvegicus


Alignment Length:178 Identity:38/178 - (21%)
Similarity:72/178 - (40%) Gaps:60/178 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SPNRWILLLIFY-ISYLMFGAAIYYHIEHGEEKISRAEQRKAQIAINEYLLEELGDKNTTTQDEI 65
            |.|.::||:||. :..|:|...|||           ||:..|:.:      :..|:.:|      
  Rat   378 STNEFLLLIIFLALGVLIFATMIYY-----------AERIGARPS------DPRGNDHT------ 419

  Fly    66 LQRISDYCDKPVTLPPTYDDTPYTWTFYHAFFFAFTVCSTVGYGNISPTTFAGRMI-----MIAY 125
                 |:.:.|:                 .|::|....:|:|||::.|.|::|.::     :...
  Rat   420 -----DFKNIPI-----------------GFWWAVVTMTTLGYGDMYPKTWSGMLVGALCALAGV 462

  Fly   126 SVIGIPVNGILFAGLGEYFGRTF--EAIYRRYKKYKMSTDMHYVPPQL 171
            ..|.:|| .::....|.|:....  :.:.::.||:...      ||||
  Rat   463 LTIAMPV-PVIVNNFGMYYSLAMAKQKLPKKRKKHVPR------PPQL 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ork1NP_001285097.1 Ion_trans_2 83..144 CDD:462301 13/65 (20%)
Ion_trans_2 185..266 CDD:462301
Kcnc4XP_038959057.1 Potassium_chann 1..29 CDD:431870
BTB_KCNC2_4 35..159 CDD:349722
Ion_trans 226..484 CDD:459842 32/151 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.