DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ork1 and kcnq2a

DIOPT Version :9

Sequence 1:NP_001285097.1 Gene:Ork1 / 32020 FlyBaseID:FBgn0017561 Length:1019 Species:Drosophila melanogaster
Sequence 2:NP_001108379.1 Gene:kcnq2a / 100141342 ZFINID:ZDB-GENE-080220-37 Length:349 Species:Danio rerio


Alignment Length:88 Identity:23/88 - (26%)
Similarity:43/88 - (48%) Gaps:6/88 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 TFYHAFFFAFTVCSTVGYGNISPTTFAGRMIMIAYSVIGIPVNGILFAGLGEYFGRTFEAIYRRY 155
            |:..|.::.....:|:|||:..|.|:.||:|...:|:||:....:....||..|....:..:|: 
Zfish   264 TYADALWWGLVTLTTIGYGDKFPVTWNGRLIAATFSLIGVAFFALPAGILGSGFALKVQEQHRQ- 327

  Fly   156 KKYKMSTDMHYVPPQLGLITTVV 178
            |.::...:     |..|||..::
Zfish   328 KHFEKRRN-----PAAGLIQVIL 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ork1NP_001285097.1 Ion_trans_2 <90..144 CDD:285168 16/52 (31%)
Ion_trans_2 185..269 CDD:285168
kcnq2aNP_001108379.1 Ion_trans 119..325 CDD:278921 17/60 (28%)
Ion_trans_2 240..315 CDD:285168 15/50 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D774951at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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