DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2186 and rbm33

DIOPT Version :9

Sequence 1:NP_001368978.1 Gene:CG2186 / 32017 FlyBaseID:FBgn0030243 Length:1193 Species:Drosophila melanogaster
Sequence 2:NP_001017336.2 Gene:rbm33 / 550090 XenbaseID:XB-GENE-492091 Length:1316 Species:Xenopus tropicalis


Alignment Length:1424 Identity:300/1424 - (21%)
Similarity:471/1424 - (33%) Gaps:458/1424 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 DDLLNYELGDDIDDQALLGADEDELLLSDEELEKDVTSEVKQQMRAEAEEWAQEQIRQHERKHKE 70
            ||..:.||.||:.::.:|...:..|.||||||..|:       ::::.||               
 Frog    28 DDDWDSELEDDLLEEDVLPGKKSSLDLSDEELNDDL-------LQSDEEE--------------- 70

  Fly    71 QLQADATAATEVTVAATATA------EVAPTLRAQPELASSPAPDPVPAKPLVAQVEKHVDTAH- 128
              |....:|..||::..|||      |::.::...||:..   |:....:.:..:||:....|. 
 Frog    71 --QDPNYSAQGVTLSLNATAGGLTSFELSKSINEDPEVEE---PEMGEDEAVYEEVEEPEGCAED 130

  Fly   129 AAVAAEPAKEL---------------------------------VSASRSESPQQQAKEEAPPAD 160
            .|.|.|.|.||                                 ....:.:...|:|:..|...:
 Frog   131 FADAYEEADELPEEHTEYMDEETTDEVLDLEINEPLDEFQEEVYTQTYKRQKMMQEAEFAANDVE 195

  Fly   161 CAEKEATQNNGNSEEQAENAGSQSEAERGLGLCSLLASSQESLPSASSASVISDPREDDEEREER 225
            ..|:||.:.......:.::..:.||        .:...|||.:|....   .||..:|:||...|
 Frog   196 ETEEEAIEETAEESIETQDPANDSE--------EVPVESQEMVPETKE---YSDEDDDEEEGGGR 249

  Fly   226 TNYKTA-----------SERSDNNLRQQQE-----HAHMSPYQHQQRRLHGH--GDKPRVGGGGR 272
            ..:|:.           |.|...|:.:..|     .|.:..::..:|...|.  ..:.|.||...
 Frog   250 IRFKSERKEGTIIRLSDSTRERRNIPETLELSAEAKASLQEFEEMERMRKGRYCAKRGRRGGMNP 314

  Fly   273 FMHGQQQQQ------QQQQSQMGKPPRGIGTRHHL--------LRNPSPSFGIQQQRMGMAGMQP 323
            ...|:|:..      ::|:|..|:|.|.:..::.:        .||||..          :...|
 Frog   315 MFRGEQRHDSNDRRIREQRSSHGQPIRSLFHQNQIQPLLPMPRSRNPSSD----------SMTSP 369

  Fly   324 PPQR----YGMPGNAPPPQHLALMSTP-------VGAAPTAACLLPLTVPVTPLTLSIPQAHPSH 377
            |||.    .|.|          |||||       :........:.|:.||:.|            
 Frog   370 PPQEKQRMVGKP----------LMSTPQQPKNIHINPHFKGNVVAPVQVPLLP------------ 412

  Fly   378 QVHQQQQQTLSNPTF----------IPIPGQY---PATQPPNQSPQQAPTNTQQPHSAPASPLHT 429
             ...|.:..:.:|.|          .|:||.:   |..|.|.::|...|.........|..|   
 Frog   413 -APNQSRPPMGSPRFPGMPDFQHVPSPVPGNFNPPPRLQEPWRNPPPQPERETFFLGEPRFP--- 473

  Fly   430 PTHSHMMHHSHNPNG---GVL--HHLLP----HPHEQVRVGLLQPPPLAY-------------AP 472
              :.|:..|.:.|.|   .:|  :|.||    ||..|...|..||.|...             .|
 Frog   474 --NQHLFDHRNPPPGPPPPLLNNNHSLPNQGQHPFNQPGPGFNQPSPQPRFNQPGPQPNFSQPGP 536

  Fly   473 NPG-------------------GYRNGALLGPGPGPGLHQQHQSPHQQQSGMRP----PLYRNAP 514
            .||                   |:.......|||.||.:|....|...|||.:|    |.:....
 Frog   537 QPGFPQPGPGPQQNFNQPGPPPGFNQPGFSQPGPQPGFNQPGPQPGFTQSGPQPVFNQPGFGQPG 601

  Fly   515 PSYGYDQ-GHPPQHPQQFMRPHNGWRPQGDNARMQRPPLQTLPPHMMPGAPPNYANGMGMRGPPP 578
            |..|::| ||.|...||      |....|.|    :||.....|...|.||          |||.
 Frog   602 PQPGFNQVGHQPGFNQQ------GMNQPGYN----QPPNVGPQPAFNPPAP----------GPPG 646

  Fly   579 QQQQSQQPPQQQPAPQQAGNPLQQAVNPGQPPQQPNG--------------PPQQQ-----GSSS 624
            ..||.   |..|||..|:|...::.|.|..|...|.|              ||:.|     |...
 Frog   647 FNQQG---PLPQPAFNQSGFSRERPVRPNAPSPGPMGIPPFNQSSPNRHFPPPRPQFPPGPGQPF 708

  Fly   625 VPRVSKVLINPNFKGGVEAATNKFIKETHFMPAINSEAELLRQQVEFINKNRQYIEKRRMERS-- 687
            :|.     |.||.:|.::|.... ..:.|..|........:.||     ..||:::..:|..:  
 Frog   709 MPH-----IQPNIQGPMQAPMQP-PHQPHHTPGPLKPPMPIPQQ-----PFRQHLQSPQMPLNNR 762

  Fly   688 --PPSSGSSTGAASSGQAGERRRTRSR-SRSRGRSYSPVKRVERERERERERERDRERDRERDRE 749
              ||.........:....|.::...:| |..|....:|                           
 Frog   763 LRPPKPRQGVPPQNMTMGGNQQMMHTRNSNLRELPIAP--------------------------- 800

  Fly   750 RYGANRAAGNRGFRRASSRDRDENRGAASTASAQGAGGSASSGAAPPKRRRSGSAGGGTARNPFS 814
                           |||.||::.: ..|.|..:..|.:|      |:.|..|      ..||..
 Frog   801 ---------------ASSLDRNKMK-PNSAAQMKPVGTTA------PQTRPVG------VGNPHV 837

  Fly   815 GEPRG---RPSETGSRSMPSDEDEETRNYRLEIEKQKQLREKIMRDKELKRRRAA---------- 866
            .:...   :..|...|....|||||||||||:||:||:|||.|::.|||:|::.|          
 Frog   838 AKQANASIQMQEEVKREQFPDEDEETRNYRLKIEEQKRLREAILKQKELRRQQQAGARKKELLER 902

  Fly   867 -------------EEKLHEEKRAEQH---------------------NTSPARDDQEVAAGQGSA 897
                         :::|.::::.:|.                     ..:||..:::.:....:.
 Frog   903 LSHQQQQQQQQQQQQQLQQQQQQQQQQQQQQQQQQQQQVQQQTPPGPQQAPAEQEKKTSPVTNNV 967

  Fly   898 APTPA--ASKHRP-------TASAGERKVISLKRRDDQDASSVRSRQAQGS---------QSNAQ 944
            .|.|:  .::.||       |...|...|..|::......::..|...||.         |:...
 Frog   968 NPIPSLTGTQIRPNVKNRLLTQKPGTPPVNVLQKIPTVQHTTGASTPVQGQPKKIIKKTVQNRVM 1032

  Fly   945 AGQGQQQQQAARKQLTAAKIAPEAKRSITDHLAPSSKQHHHHHQQHHQTAAAPA---RTVVLGSG 1006
            .....|:....|..:.||::.|:....:..            .|...|.||.||   |||:..|.
 Frog  1033 TDNPVQKVHQVRPAVNAAQLGPQQIAKVAS------------VQGQPQAAARPAATKRTVMQRSN 1085

  Fly  1007 AVAG---GTPPKPRDKLRLGTPSDDEVELDYDDDDLLLDEEDRLLATPSPPPQ------------ 1056
            :.:|   .||.|.| .::|.....|...:..:.:..:...:.::.....||.|            
 Frog  1086 SASGEAANTPTKVR-VIKLSAAGGDNANVSAEGNLPVQSLQPKINPQQRPPFQQRLQQQQLQQQQ 1149

  Fly  1057 -----KASSKRSATPEPLVVKRNHKAMRGGSSTSAPSFSSNQRRVVLKPTSNG---SSSSGGDQQ 1113
                 |.:..:....:|......|         ..|.|..:.|::...|.|.|   .:|..|..|
 Frog  1150 QRPIRKVTIAKGTVQQPPQQNLYH---------GPPPFQGHARQIRSHPESAGPRIMNSVQGHHQ 1205

  Fly  1114 QLSHSGRQRDRRRGGE---DSALQRKGGVG-----------SVGGSSSSGSGGGIFDRL 1158
            ......|.|.|..||:   ...:..|..:.           ||.|.|||.:.|.:.:.|
 Frog  1206 PNKVIMRGRGRGVGGQMGRGRMMPNKQNLRVVECKPQPCAVSVEGLSSSTTDGQLRNML 1264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2186NP_001368978.1 PHA03247 <323..629 CDD:223021 97/394 (25%)
rbm33NP_001017336.2 PTZ00341 <58..>172 CDD:173534 25/140 (18%)
PHA03247 <351..773 CDD:223021 115/493 (23%)
TPH <846..>901 CDD:372768 26/54 (48%)
RRM_SF 1246..1312 CDD:240668 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 115 1.000 Domainoid score I5946
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 116 1.000 Inparanoid score I4673
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5746
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.080

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