DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2202 and ranshi

DIOPT Version :9

Sequence 1:NP_572657.2 Gene:CG2202 / 32014 FlyBaseID:FBgn0030240 Length:889 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:301 Identity:83/301 - (27%)
Similarity:125/301 - (41%) Gaps:50/301 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 PDNRCEVCQR------TFSRHCHLLRHKLSHLEKKP---HNCPHCPKAFARSDHLKAHVQSLHSN 527
            |:..|..||.      :|...|..::.:|.|.:...   ..|...||:....:.|:..:..:...
  Fly    48 PNRLCASCQTCLQQAISFRERCLEVQRELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIE 112

  Fly   528 KEHKCSLCE-----AAFSRLDALERHKVSKH--NGEGLEPGSELKLQLAEHTCEYCSK------- 578
            .|....|.|     :.|...|.|...|:::.  |.|.....||:...:.|...|..:|       
  Fly   113 VERLDDLNEGPIQSSGFKVEDILNESKINEDEPNNEDDIDYSEMDYLIYESDTEVDAKQELKSDS 177

  Fly   579 ------------RFSSKTYLRKHTLLHTDFLYACKTCDETFRERAQLREHEKTHTGQRNFLCCIC 631
                        |.|::|:.             |:.|....::|.....|.|.|.|.:.|.|..|
  Fly   178 ENPKKRRNRRNPRDSNRTFF-------------CEECGNHIKDRISFILHCKRHRGVKEFGCEFC 229

  Fly   632 GDSFARNDYLRVHMRRHNGEKPYKCRFCVKAF-PRATDLKVHERYHTGTKPNLCNTCGKSFHRAY 695
            .|.|.....|:.|:|:|.||||:|||.|.::| ..:|.|| |||.||..:|.:|..|..:|..:|
  Fly   230 EDRFCTPAELKRHIRKHTGEKPFKCRHCSRSFSDYSTRLK-HERTHTNERPFVCKECNNAFTTSY 293

  Fly   696 NLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGER 736
            .|..||..||||:.::||.|.|.|::...|..|.|.:...|
  Fly   294 ILKNHMLVHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRR 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2202NP_572657.2 zf-AD 45..121 CDD:285071
C2H2 Zn finger 150..171 CDD:275368
C2H2 Zn finger 192..213 CDD:275370
C2H2 Zn finger 221..239 CDD:275370
COG5048 <443..730 CDD:227381 81/293 (28%)
C2H2 Zn finger 476..496 CDD:275368 6/25 (24%)
zf-H2C2_2 488..513 CDD:290200 5/27 (19%)
C2H2 Zn finger 504..525 CDD:275368 4/20 (20%)
C2H2 Zn finger 532..548 CDD:275368 5/20 (25%)
C2H2 Zn finger 573..593 CDD:275368 5/38 (13%)
C2H2 Zn finger 600..620 CDD:275368 5/19 (26%)
zf-H2C2_2 613..637 CDD:290200 9/23 (39%)
C2H2 Zn finger 628..648 CDD:275368 7/19 (37%)
zf-H2C2_2 640..663 CDD:290200 12/22 (55%)
C2H2 Zn finger 656..676 CDD:275368 10/20 (50%)
C2H2 Zn finger 684..704 CDD:275368 7/19 (37%)
zf-C2H2 684..704 CDD:278523 7/19 (37%)
zf-H2C2_2 696..721 CDD:290200 12/24 (50%)
C2H2 Zn finger 712..732 CDD:275368 8/19 (42%)
C2H2 Zn finger 739..755 CDD:275368
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 6/28 (21%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 25/54 (46%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:290200 12/23 (52%)
C2H2 Zn finger 254..274 CDD:275368 10/20 (50%)
zf-H2C2_2 269..291 CDD:290200 10/22 (45%)
C2H2 Zn finger 282..302 CDD:275368 7/19 (37%)
zf-H2C2_2 295..319 CDD:290200 12/23 (52%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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