DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Imp and AT1G14170

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001117282.1 Gene:AT1G14170 / 837976 AraportID:AT1G14170 Length:479 Species:Arabidopsis thaliana


Alignment Length:504 Identity:108/504 - (21%)
Similarity:206/504 - (40%) Gaps:126/504 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 EFEGS------KLHAEQLDKNQRRSQRNQRNPYPGMPGPGRQADFPLRILVQSEMVGAIIGRQGS 163
            ||.|:      .|| ::.|:|...|:                 |...|.|...:..|:|||:.|.
plant    18 EFTGNGGSKRRNLH-DETDQNVIASE-----------------DTVYRYLCPVKKTGSIIGKGGE 64

  Fly   164 TIRTITQQSRARVDVHRKENVGSLEKSITIYGNPENCTN----------ACKRILEV-------M 211
            ..:.|..::::.:.:: :...|..|:.:|:|...|...:          |...:.:|       .
plant    65 IAKQIRSETKSNMRIN-EALPGCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVHDMVVADA 128

  Fly   212 QQEAISTNKGELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSIND-----I 271
            .|:..:.:..:|. |...:.:::|..::.||.:|||.|..|:.:..||:.:|.|  |.|     .
plant   129 DQDDGTDDDNDLG-EKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRV--IKDHLPACA 190

  Fly   272 NSFNLERIITVKGLIENMSRAENQISTKLRQS---YENDLQAMAPQSLMFPGLHPMAMMSTPGNG 333
            .:.:.:.::.:.|....:..|..|:::.|..:   :::.|.:.:..|:..||...|:...|    
plant   191 LTLSHDELLLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPGAMLMSAALT---- 251

  Fly   334 MVFNTSMPFPSCQSFAMSKTPASVVPPVFPNDLQETTYLYI-PNNAVGAIIGTRGSHIRSIMRFS 397
                     .|.:::|:.:..|         |.:|....:| |...||.:||..|..|..|.:.:
plant   252 ---------SSHRNYAVRRDIA---------DAREFCVCFICPAENVGGVIGKGGGFINQIRQET 298

  Fly   398 NASLKIAPLDADKP------------LDQQTERKVTIVGTPEGQWKAQYMIFEKMREEGFMCGTD 450
            .|::::...:.|..            .||.......|        :.|....||:.::     .:
plant   299 GATIRVNTSETDDDDCIIFISSKEFYEDQSPAVNAAI--------RLQQRCSEKVGKD-----AN 350

  Fly   451 DVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSV 515
            |:.::..|||:|||:|.:|||||..:.|::.||.:.|::.:....|....::|..|.|.|   |.
plant   351 DLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITG---SP 412

  Fly   516 QSAQR-------RIRA---------MMLSTNPPPI------TKKQKAAK 542
            .:|.:       |:||         ::|.|:.|.|      :.|.|.||
plant   413 DAAMKALTQVILRLRANSFDMDHGLVLLPTSFPYIPQVTESSSKSKYAK 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM <37..>146 CDD:223796 9/46 (20%)
RRM2_VICKZ 42..118 CDD:240805 5/18 (28%)
KH-I 145..208 CDD:238053 14/72 (19%)
KH-I 232..296 CDD:238053 16/68 (24%)
KH-I 369..436 CDD:238053 15/79 (19%)
KH-I 455..522 CDD:238053 23/73 (32%)
AT1G14170NP_001117282.1 KH-I 43..118 CDD:412160 15/75 (20%)
KH-I 147..219 CDD:412160 17/73 (23%)
KH-I 274..333 CDD:412160 13/58 (22%)
KH-I 355..427 CDD:412160 24/74 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D286875at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm3056
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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