DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Imp and AT5G09560

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001318518.1 Gene:AT5G09560 / 830815 AraportID:AT5G09560 Length:600 Species:Arabidopsis thaliana


Alignment Length:601 Identity:123/601 - (20%)
Similarity:220/601 - (36%) Gaps:159/601 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 EGSKLHAEQLDKNQRRSQRNQRNPYPGMPGPGRQADFP----LRILVQSEMVGAIIGRQGSTIRT 167
            ||.|..|          |...|.|.| :|.| ..|..|    .|||......|.:||:.|..::.
plant     2 EGKKFGA----------QSTARAPLP-LPQP-PSAPPPEYVTFRILCNVSQAGHVIGKHGGMVKK 54

  Fly   168 ITQQSRARVDVHRKENVGSLEKSITIYGN------------PENCTNACKRILEVMQQEAISTNK 220
            :.:.:.:.:.|.:.....|..:.|.|:|:            ..|.:|..|:    .|::.:..::
plant    55 LHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVSRVKLGVIVNNVSNREKK----EQEQEVEVSR 115

  Fly   221 GELS----------PEC--SEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINS 273
            .:.:          .:|  |.:...:|...:.:..:|||:|..::||:::|...:.:.| :|::.
plant   116 AQYALIRVFEALNFGDCTSSTVSCNLLMEGSHVVTVIGKNGELMQRILEETGCNVQLRS-HDLSI 179

  Fly   274 FNLERIITVKGLIENMSRAENQISTKLRQ--SYENDLQAMAPQSLMFPGLHPMAMMSTPGNGMVF 336
            ......:.:|  ||.     |::|..::.  |..:.|||..|.|.  ..||..|:.......|.:
plant   180 CTNPGDVVLK--IEG-----NRLSAVMKALVSISSRLQACPPIST--ASLHAEAVPDALRRPMEY 235

  Fly   337 NTS--------------------------------------MPFPSCQSFAMSKTPASVVPPV-- 361
            .:.                                      :|.||.....:  |.||..|||  
plant   236 RSQQYREVDPHGSLHRHVEISQEDALVRPFFRTITQPRIDYLPHPSYDHRLI--TSASKNPPVTI 298

  Fly   362 ------FPNDLQETTY-LYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERK 419
                  ..:|:::... :...|.:...:|.||.        .::||:.:.  |.....|   ||.
plant   299 KQPLQASKDDIRQVDLKILCSNESASVVIKTRS--------VTDASISVG--DRHPDCD---ERL 350

  Fly   420 VTIVG-------TPEGQWKAQYMIFEKMREEGFMCGTDD---VRLTVELLVASSQVGRIIGKGGQ 474
            |||..       |.|.| :|..::|..|.|.......|.   ..:|..|:|.|:|:..::|:.|:
plant   351 VTITAFEKTKDITSESQ-RALVLVFSNMYENATAKVLDSGLTSSITARLVVRSNQINCLLGEEGR 414

  Fly   475 NVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLSTNPPPITKKQK 539
            ....:|:.||:.|.:......|....:....|.|.|.|.:|:.|..::.:|:             
plant   415 IKTTIQQRTGAFITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSML------------- 466

  Fly   540 AAKEQLQQQQQSLAGAASSGSQQQQPQSPSQQQALPPQLHHQPVSSASSSSTPP--AHHQQQAST 602
             .::.:.|..|..:..|.:.|:...|      :...|...:.|....||:..|.  .|:..|||:
plant   467 -REDLINQSFQRGSQYAVNYSEDPFP------ELFSPTAGYTPTFGRSSTMDPNDIFHYSSQASS 524

  Fly   603 AATSHQLQQQQPSPPP 618
                    :...||||
plant   525 --------RLWESPPP 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM <37..>146 CDD:223796 12/42 (29%)
RRM2_VICKZ 42..118 CDD:240805 4/10 (40%)
KH-I 145..208 CDD:238053 15/74 (20%)
KH-I 232..296 CDD:238053 14/63 (22%)
KH-I 369..436 CDD:238053 17/74 (23%)
KH-I 455..522 CDD:238053 18/66 (27%)
AT5G09560NP_001318518.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D286875at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X348
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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