DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Imp and pcbp2

DIOPT Version :10

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001039068.1 Gene:pcbp2 / 733863 -ID:- Length:362 Species:Xenopus tropicalis


Alignment Length:491 Identity:115/491 - (23%)
Similarity:163/491 - (33%) Gaps:167/491 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 LRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSLEKSITIYGNPENCTNACKRILE 209
            ||::|.:...|::||:.||.|:.|.:.:.|:|.|.......|.|:::||.|.|:......|:|..
 Frog    14 LRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICV 78

  Fly   210 VMQQEAISTNKGELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSF 274
            ||.:   |..||...|         .......|.||...|..                       
 Frog    79 VMLE---SPPKGATIP---------YRPKPASGPIIFAGGQV----------------------- 108

  Fly   275 NLERIITVKGLIENMSRAENQISTKLRQSY---ENDLQAMAPQSLMFPGLHPMAMMSTPGNGMVF 336
            ..|.|:...|....:::.:...:..::..|   ..||..          ||.:||..||      
 Frog   109 RAETILASAGNHTVLAQPQPAPAFAIQGQYAIPHPDLTK----------LHQLAMQHTP------ 157

  Fly   337 NTSMPFPSCQSFAMSKTPASVVPPVFPN-DLQETT---YLYIPNNAVGAIIGTRGSHIRSIMRFS 397
                           .||.....|.||. |....|   .|.|||:.:|.|||.:||.|..|.:.|
 Frog   158 ---------------FTPLGQTTPGFPGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMS 207

  Fly   398 NASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQYMIFEKMREEGFMCGTDDVRLTVELLVAS 462
            .|.:|||     ...:...||:|||.|:|.....|||:|                ..::|:...|
 Frog   208 GAQIKIA-----NASEGNGERQVTITGSPANISLAQYLI----------------NASLEMAKLS 251

  Fly   463 SQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSVQSAQRRIRAMML 527
            :|                  |.||                .|||.:               .|.|
 Frog   252 TQ------------------TASV----------------TTPVDL---------------NMNL 267

  Fly   528 STNPPPITKKQKAAKEQLQQQQQSLAGAASSGSQQQQPQSPSQQQALPPQLHHQPVSSASSSSTP 592
            |.:..|.:.....|         .||.||::.:  ....||...|.||...:..||||.....|.
 Frog   268 SQSTTPSSTPTSMA---------VLAAAAAASA--VSVNSPPPLQTLPTTHYAVPVSSLLGMKTV 321

  Fly   593 PAHHQQQASTAATSHQLQQQQPSPPPPGNATAAAAQ 628
            |......|:||..:             ||.||..|:
 Frog   322 PLLALNAAATAGAT-------------GNLTAYTAK 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM2_VICKZ 42..118 CDD:409794
KH-I_IGF2BP_rpt1 144..211 CDD:411828 21/65 (32%)
KH-I_IGF2BP_rpt2 231..302 CDD:411829 7/70 (10%)
KH-I_IGF2BP_rpt3 368..437 CDD:411830 28/71 (39%)
KH-I_IGF2BP_rpt4 455..523 CDD:411831 9/67 (13%)
pcbp2NP_001039068.1 KH-I_PCBP3_rpt2 7..85 CDD:411947 24/73 (33%)
KH-I 170..244 CDD:469614 30/94 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.