DRSC/TRiP Functional Genomics Resources

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Protein Alignment Imp and pcbp2

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001039068.1 Gene:pcbp2 / 733863 XenbaseID:XB-GENE-5903797 Length:362 Species:Xenopus tropicalis


Alignment Length:491 Identity:115/491 - (23%)
Similarity:163/491 - (33%) Gaps:167/491 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 LRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSLEKSITIYGNPENCTNACKRILE 209
            ||::|.:...|::||:.||.|:.|.:.:.|:|.|.......|.|:::||.|.|:......|:|..
 Frog    14 LRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICV 78

  Fly   210 VMQQEAISTNKGELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSF 274
            ||.:   |..||...|         .......|.||...|..                       
 Frog    79 VMLE---SPPKGATIP---------YRPKPASGPIIFAGGQV----------------------- 108

  Fly   275 NLERIITVKGLIENMSRAENQISTKLRQSY---ENDLQAMAPQSLMFPGLHPMAMMSTPGNGMVF 336
            ..|.|:...|....:::.:...:..::..|   ..||..          ||.:||..||      
 Frog   109 RAETILASAGNHTVLAQPQPAPAFAIQGQYAIPHPDLTK----------LHQLAMQHTP------ 157

  Fly   337 NTSMPFPSCQSFAMSKTPASVVPPVFPN-DLQETT---YLYIPNNAVGAIIGTRGSHIRSIMRFS 397
                           .||.....|.||. |....|   .|.|||:.:|.|||.:||.|..|.:.|
 Frog   158 ---------------FTPLGQTTPGFPGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMS 207

  Fly   398 NASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQYMIFEKMREEGFMCGTDDVRLTVELLVAS 462
            .|.:|||     ...:...||:|||.|:|.....|||:|                ..::|:...|
 Frog   208 GAQIKIA-----NASEGNGERQVTITGSPANISLAQYLI----------------NASLEMAKLS 251

  Fly   463 SQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSVQSAQRRIRAMML 527
            :|                  |.||                .|||.:               .|.|
 Frog   252 TQ------------------TASV----------------TTPVDL---------------NMNL 267

  Fly   528 STNPPPITKKQKAAKEQLQQQQQSLAGAASSGSQQQQPQSPSQQQALPPQLHHQPVSSASSSSTP 592
            |.:..|.:.....|         .||.||::.:  ....||...|.||...:..||||.....|.
 Frog   268 SQSTTPSSTPTSMA---------VLAAAAAASA--VSVNSPPPLQTLPTTHYAVPVSSLLGMKTV 321

  Fly   593 PAHHQQQASTAATSHQLQQQQPSPPPPGNATAAAAQ 628
            |......|:||..:             ||.||..|:
 Frog   322 PLLALNAAATAGAT-------------GNLTAYTAK 344

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity