DRSC/TRiP Functional Genomics Resources

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Protein Alignment Imp and Fubp1

DIOPT Version :10

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_038959028.1 Gene:Fubp1 / 654496 RGDID:1591892 Length:697 Species:Rattus norvegicus


Alignment Length:581 Identity:123/581 - (21%)
Similarity:201/581 - (34%) Gaps:162/581 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 NP-----YPGMPGPGRQADFPLRILVQSE---------------------------MVGAIIGRQ 161
            ||     :.|||.|.:......::..|::                           |||.||||.
  Rat    72 NPSSTTHWEGMPSPFKDQPDAKKVPPQNDSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRG 136

  Fly   162 GSTIRTITQQSRARVDVHRKENVGSLEKSITIYGNPENCTNACKRILEVMQQEAISTNKGELSPE 226
            |..|..|.|:|..::.: ..::.|..|:|..:.|.||:..:| ||:|:.:      ..||..:|.
  Rat   137 GEQISRIQQESGCKIQI-APDSGGLPERSCMLTGTPESVQSA-KRLLDQI------VEKGRPAPG 193

  Fly   227 C------SEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGL 285
            .      .....:|:...:..|.:|||.|.|||::.:....|:.:......|: ..::.:.:.| 
  Rat   194 FHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT-GADKPLRITG- 256

  Fly   286 IENMSRAENQISTKLRQSYENDLQAMAPQSLMFPGLHPMAMMSTPGNGMVFNTSMPFPSCQSFAM 350
                      ...|::|:.|..|:.:..|.    |..  .:.:..|:.:..|..:..|       
  Rat   257 ----------DPYKVQQAKEMVLELIRDQG----GFR--EVRNEYGSRIGGNEGIDVP------- 298

  Fly   351 SKTPASVVPPVFPNDLQETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQ 415
                                   ||..|||.:||..|..|:.|...:...::..|.|...|    
  Rat   299 -----------------------IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---- 336

  Fly   416 TERKVTIVGTPEGQWKAQYMIFEKMR--------------------EEGFMCGTDDVRLTVELLV 460
             :|...|.|.|:....|..:|.:.:|                    :..:..|..........:|
  Rat   337 -DRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIV 400

  Fly   461 ASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEE--------TPVHIIGLFYSVQS 517
            .:.:.|.||||||:.::.:.:.:|:.|:|..:   ||...|..        ||..|   .|:.|.
  Rat   401 PTGKTGLIIGKGGETIKSISQQSGARIELQRN---PPPNADPNMKLFTIRGTPQQI---DYARQL 459

  Fly   518 AQRRIRAMMLSTNP--PPITKKQKAAKEQLQQQQQSLAGAASSGSQQQQPQSPSQQQALPPQLHH 580
            .:.:|..   ..||  ||:.......     .......|....|: ...|.:|:.....||    
  Rat   460 IEEKIGG---PVNPLGPPVPHGPHGV-----PGPHGPPGPPGPGT-PMGPYNPAPYNPGPP---- 511

  Fly   581 QPVSSASSSSTPPAHHQQQASTAATSHQLQQQQPSPPPPG---NATAAAA------QQQQQ 632
                 ..:...|||.:..|....|..|..||..|.|...|   |:.|.||      |||.|
  Rat   512 -----GPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGTDPNSAAWAAYYAHYYQQQAQ 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM2_VICKZ 42..118 CDD:409794
KH-I_IGF2BP_rpt1 144..211 CDD:411828 23/93 (25%)
KH-I_IGF2BP_rpt2 231..302 CDD:411829 13/70 (19%)
KH-I_IGF2BP_rpt3 368..437 CDD:411830 18/68 (26%)
KH-I_IGF2BP_rpt4 455..523 CDD:411831 19/75 (25%)
Fubp1XP_038959028.1 KH-I_FUBP1_rpt1 115..189 CDD:411906 23/81 (28%)
KH-I_FUBP1_rpt2 203..272 CDD:411909 16/80 (20%)
KH-I_FUBP1_rpt3 293..360 CDD:411912 20/101 (20%)
KH-I_FUBP1_rpt4 393..464 CDD:411915 19/76 (25%)
DUF1897 628..>642 CDD:462653
Blue background indicates that the domain is not in the aligned region.

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