DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Imp and nova2

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001296453.1 Gene:nova2 / 553201 ZFINID:ZDB-GENE-080211-1 Length:517 Species:Danio rerio


Alignment Length:558 Identity:126/558 - (22%)
Similarity:213/558 - (38%) Gaps:135/558 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 GIVKQCEAISSKDQNTQTVHITFENPEQAQRAAVGLNGVEFEGSKLHAEQLDKNQRRSQRNQRNP 130
            |.|:|....|:...:.|..|:..:.|:..:|.      :|........::.:...|.:|....:|
Zfish     5 GAVQQNGIFSNPHHHNQQPHMESDPPDSRKRP------LETPTEASSTKRTNTGDRCNQAAIHDP 63

  Fly   131 --YPGMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENV--GSLEKSI 191
              ...:.|...:.::.|::|:.|...|:|||:.|.||..:.:::.|.:.:.:.::.  |:.|:..
Zfish    64 PFSSDIVGFHEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVC 128

  Fly   192 TIYGNPENCTNACKRILEVMQQEAISTNKGE----LSPECS-----EICLKILAHNNLIGRIIGK 247
            .|.|..|...|....|.|.:::...|..|.|    |.|:.:     ....|::..|:..|.||||
Zfish   129 LIQGTVEALNNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLIVPNSTAGLIIGK 193

  Fly   248 SGNTIKRIMQDTDTKITVSSINDINSFNL-ERIITVKGLIENMSRAENQISTKLRQS-------- 303
            .|.|:|.:|:.:...:.:|...|  ..|| ||::|:.|..|...:|...|..|:::.        
Zfish   194 GGATVKAVMEQSGAWVQLSQKPD--GINLQERVVTISGEPEQNRKAVEIIVQKIQEDPQSSSCLN 256

  Fly   304 -------------------YENDLQAM---------------APQSLMFPGLHPMAMMSTPGNGM 334
                               |.|..:.|               ...||...|..|..|.|..||.:
Zfish   257 ISYSNISGPVANSNPTGSPYANSAEVMPAAAAAAAATASSLLGQASLAGVGAFPTTMSSFSGNDL 321

  Fly   335 V-----FNTSMPF------------PSCQSFAMSKTPASVVPPV---------FPNDLQETTYLY 373
            :     .||...:            |:..|..::...||..|..         :.||  .:|...
Zfish   322 LAITSALNTLASYGYNTNSLGLGLNPAAASGVLAAVAASANPAAAAAANLLASYAND--ASTSAG 384

  Fly   374 IPNNAVGAIIGTRGSHIRSIMRFSNASLKIA-PLDADKPLDQQTERKVTIVGTPEGQWKAQYMIF 437
            .|..::|..  |.|| :.:....:|..|..| ||.|.           :::.|            
Zfish   385 HPATSLGGF--TLGS-LAAATGATNGYLSAASPLVAS-----------SLLAT------------ 423

  Fly   438 EKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDE 502
            ||:.|     |..||   ||:.|..:.||.|:||||:.:.|.|.:||:.|::.:.....|  |..
Zfish   424 EKLAE-----GAKDV---VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTR 478

  Fly   503 ETPVHIIGLFYSVQSAQRRIRAMML------STNPPPI 534
            ...|.|.|...:.|:||..|...:.      :|||..:
Zfish   479 NRKVTITGSPAATQAAQYLISQRITYEQGVRATNPQKV 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM <37..>146 CDD:223796 13/81 (16%)
RRM2_VICKZ 42..118 CDD:240805 9/51 (18%)
KH-I 145..208 CDD:238053 17/64 (27%)
KH-I 232..296 CDD:238053 21/64 (33%)
KH-I 369..436 CDD:238053 13/67 (19%)
KH-I 455..522 CDD:238053 23/66 (35%)
nova2NP_001296453.1 PCBP_like_KH 79..145 CDD:239089 17/65 (26%)
PCBP_like_KH 179..242 CDD:239089 21/64 (33%)
KH-I 433..498 CDD:238053 24/69 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574658
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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