DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Imp and Fubp1

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_006501723.1 Gene:Fubp1 / 51886 MGIID:1196294 Length:687 Species:Mus musculus


Alignment Length:581 Identity:123/581 - (21%)
Similarity:201/581 - (34%) Gaps:162/581 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 NP-----YPGMPGPGRQADFPLRILVQSE---------------------------MVGAIIGRQ 161
            ||     :.|||.|.:......::..|::                           |||.||||.
Mouse    72 NPSSTTHWEGMPSPFKDQPDAKKVPPQNDSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRG 136

  Fly   162 GSTIRTITQQSRARVDVHRKENVGSLEKSITIYGNPENCTNACKRILEVMQQEAISTNKGELSPE 226
            |..|..|.|:|..::.: ..::.|..|:|..:.|.||:..:| ||:|:.:      ..||..:|.
Mouse   137 GEQISRIQQESGCKIQI-APDSGGLPERSCMLTGTPESVQSA-KRLLDQI------VEKGRPAPG 193

  Fly   227 C------SEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGL 285
            .      .....:|:...:..|.:|||.|.|||::.:....|:.:......|: ..::.:.:.| 
Mouse   194 FHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT-GADKPLRITG- 256

  Fly   286 IENMSRAENQISTKLRQSYENDLQAMAPQSLMFPGLHPMAMMSTPGNGMVFNTSMPFPSCQSFAM 350
                      ...|::|:.|..|:.:..|.    |..  .:.:..|:.:..|..:..|       
Mouse   257 ----------DPYKVQQAKEMVLELIRDQG----GFR--EVRNEYGSRIGGNEGIDVP------- 298

  Fly   351 SKTPASVVPPVFPNDLQETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQ 415
                                   ||..|||.:||..|..|:.|...:...::..|.|...|    
Mouse   299 -----------------------IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP---- 336

  Fly   416 TERKVTIVGTPEGQWKAQYMIFEKMR--------------------EEGFMCGTDDVRLTVELLV 460
             :|...|.|.|:....|..:|.:.:|                    :..:..|..........:|
Mouse   337 -DRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIV 400

  Fly   461 ASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEE--------TPVHIIGLFYSVQS 517
            .:.:.|.||||||:.::.:.:.:|:.|:|..   :||...|..        ||..|   .|:.|.
Mouse   401 PTGKTGLIIGKGGETIKSISQQSGARIELQR---SPPPNADPNMKLFTIRGTPQQI---DYARQL 459

  Fly   518 AQRRIRAMMLSTNP--PPITKKQKAAKEQLQQQQQSLAGAASSGSQQQQPQSPSQQQALPPQLHH 580
            .:.:|..   ..||  ||:.......     .......|....|: ...|.:|:.....||    
Mouse   460 IEEKIGG---PVNPLGPPVPHGPHGV-----PGPHGPPGPPGPGT-PMGPYNPAPYNPGPP---- 511

  Fly   581 QPVSSASSSSTPPAHHQQQASTAATSHQLQQQQPSPPPPG---NATAAAA------QQQQQ 632
                 ..:...|||.:..|....|..|..||..|.|...|   |:.|.||      |||.|
Mouse   512 -----GPAPHGPPAPYAPQGWGNAYPHWQQQAPPDPAKAGADPNSAAWAAYYAHYYQQQAQ 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM <37..>146 CDD:223796 6/21 (29%)
RRM2_VICKZ 42..118 CDD:240805
KH-I 145..208 CDD:238053 22/89 (25%)
KH-I 232..296 CDD:238053 12/63 (19%)
KH-I 369..436 CDD:238053 18/66 (27%)
KH-I 455..522 CDD:238053 19/74 (26%)
Fubp1XP_006501723.1 KH-I 119..181 CDD:238053 21/63 (33%)
KH_1 205..270 CDD:365809 15/76 (20%)
KH-I 295..356 CDD:238053 19/95 (20%)
KH_1 398..462 CDD:365809 19/69 (28%)
DUF1897 628..>642 CDD:370237
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831604
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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