DRSC/TRiP Functional Genomics Resources

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Protein Alignment Imp and fubp3

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001007777.1 Gene:fubp3 / 493616 ZFINID:ZDB-GENE-041121-12 Length:572 Species:Danio rerio


Alignment Length:560 Identity:116/560 - (20%)
Similarity:197/560 - (35%) Gaps:181/560 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 VQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSLEKSITIYGNPENCTNACKRILEVMQQ 213
            |..:|||.||||.|..|..|..:|..::.: ..::.|.:::..|:.|.||:...| ||:|     
Zfish    90 VPDKMVGFIIGRGGEQITRIQLESNCKIQI-AADSGGMMDRPCTLTGTPESIEQA-KRLL----- 147

  Fly   214 EAISTNKGELSPEC------------SEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVS 266
                   |::...|            |....:||...:.:|.:|||.|:|||::.:.|..|:.:.
Zfish   148 -------GQIVDRCRNGPGFHSQMDGSSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMI 205

  Fly   267 SINDINSFNLERIITVKGLIENMSRAENQISTKLRQSYENDLQAMAPQSLMFPGLHPMAMMSTPG 331
            . :|......::.:.:.|....:.:|...:...:|:..:.|                        
Zfish   206 Q-DDPMPTGSDKPLRISGDPYKVQQARELVVEIIREKDQGD------------------------ 245

  Fly   332 NGMVFNTSMPFPSCQSFAMSKTPASVVPPVFPNDLQETTYLYIPNNAVGAIIGTRGSHIRSIMRF 396
                      |.|.:|...|:..:|:       |:.      :|..|||.:||..|..|:.|...
Zfish   246 ----------FRSGRSDFGSRLGSSI-------DVA------VPRFAVGIVIGRNGEMIKKIQND 287

  Fly   397 SNASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQYMIFEKMR----EEGF------------ 445
            :...::..|.|...|     :|...::|.||....|.::|.|.::    .:||            
Zfish   288 AGVRIQFKPDDGISP-----DRVAQVMGQPERCQHAVHLINELVQTAQERDGFGGPLGPRGRGRG 347

  Fly   446 ----MCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPV 506
                ..||......|...:.:.:.|.:|||||:.::.:.:.:|:.::|                 
Zfish   348 RGDWNIGTPGGLQEVTYTIPADKCGLVIGKGGETIKNINQQSGAHVEL----------------- 395

  Fly   507 HIIGLFYSVQSAQRRIRAMMLSTNPPPITKKQ------KAAKEQLQQQQQSL---AGAASSGSQQ 562
                        ||         ||||.|...      :.:.:|::..:|.:   .||:..|...
Zfish   396 ------------QR---------NPPPNTDPNVRTFSIRGSPQQMEMARQLIDDKIGASGMGGNS 439

  Fly   563 --------QQPQSPSQQ--------------QALPPQLHHQPVSSASSSSTPPAHHQQQASTAAT 605
                    |.|.:|.|.              |...||....|..:.|.|.      |...|.|..
Zfish   440 SFGLSPFTQGPATPHQNGPQTFMTGGWGTTYQTWQPQSQQDPSHNGSQSG------QMDYSKAWE 498

  Fly   606 SH-----QLQQQQPSPPPPGNATAAAAQQQQQLA--SSQQ 638
            .:     |..|.|.|.|....|.....::|.|.|  .|||
Zfish   499 QYYKKLGQQNQGQSSGPDYSKAWEEYYKKQTQAAGPGSQQ 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM <37..>146 CDD:223796
RRM2_VICKZ 42..118 CDD:240805
KH-I 145..208 CDD:238053 20/58 (34%)
KH-I 232..296 CDD:238053 15/63 (24%)
KH-I 369..436 CDD:238053 17/66 (26%)
KH-I 455..522 CDD:238053 11/66 (17%)
fubp3NP_001007777.1 KH-I 85..147 CDD:238053 20/58 (34%)
KH-I 170..234 CDD:238053 15/64 (23%)
KH-I 260..322 CDD:238053 19/79 (24%)
KH-I 361..426 CDD:238053 18/102 (18%)
DUF1897 535..>557 CDD:286140 3/4 (75%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574663
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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