DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Imp and ps

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster


Alignment Length:544 Identity:114/544 - (20%)
Similarity:171/544 - (31%) Gaps:201/544 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 CEAISSKDQNTQ---------TVHITFENPEQAQRAAVGLNGVEFEGSKLHAEQLDKNQRRSQRN 126
            |..|..:.:|..         |.|:....|..|..|.:|..     |..:.:.|.|...|.....
  Fly   252 CSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGKG-----GETIASLQKDTGARVKMSK 311

  Fly   127 QRNPYPG-------MPG--------------------------------PGRQADFPLRILVQSE 152
            ..:.|||       :.|                                ..::.|..::|||.:.
  Fly   312 SHDFYPGTTERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNS 376

  Fly   153 MVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSL-EKSITIYGNPENCTNACKRILE------- 209
            ..|.|||:.|:.|:.|.::|.:.|.:.:|....|| |:.|||.|:.||..||||.||.       
  Fly   377 TAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQ 441

  Fly   210 --------------------------VMQQEAI-------------------------------- 216
                                      ...|.||                                
  Fly   442 SGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGIN 506

  Fly   217 -STNKGELSPE--------------------------CSEI--CLKILAHNNLIGRIIGKS---- 248
             |.|.|..:|.                          .:|:  .|.:||...::|..:|.|    
  Fly   507 LSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNG 571

  Fly   249 -----GNTIKRIMQDTDTKITVSSINDINSF------NLERIITVKGLIENMSRAENQISTKLRQ 302
                 ||.:.....|..|....|:....|.|      |||:...........||..         
  Fly   572 AHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPT--------- 627

  Fly   303 SYENDLQAMAPQ--------SLMFPGLHPMAMMSTPGNGMVFN---TSMPFPSCQSFAMSKTPAS 356
              ::.|.|.|.|        |...|...|:::     |...|.   |:....:.|...:||:|. 
  Fly   628 --QSQLDAAAVQFDPFRHLGSATAPAATPVSL-----NNNSFGLTATTGTATTAQLGGLSKSPT- 684

  Fly   357 VVPPVFPNDL--QETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERK 419
                  |.||  :::..:.:|...:|||:|..|..:..|...|.|:::|:......|  ....|.
  Fly   685 ------PGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAP--GTRNRI 741

  Fly   420 VTIVGTPEGQWKAQYMIFEKMREE 443
            |||.|.|....||||:|.:|:.||
  Fly   742 VTITGQPSAIAKAQYLIEQKINEE 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM <37..>146 CDD:223796 18/122 (15%)
RRM2_VICKZ 42..118 CDD:240805 11/55 (20%)
KH-I 145..208 CDD:238053 26/63 (41%)
KH-I 232..296 CDD:238053 18/78 (23%)
KH-I 369..436 CDD:238053 21/66 (32%)
KH-I 455..522 CDD:238053
psNP_001262415.1 PCBP_like_KH 275..340 CDD:239089 13/69 (19%)
PCBP_like_KH 368..433 CDD:239089 26/64 (41%)
KH-I 696..759 CDD:238053 21/64 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439331
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10288
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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