DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Imp and Nova1

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_006240131.1 Gene:Nova1 / 298992 RGDID:621345 Length:507 Species:Rattus norvegicus


Alignment Length:508 Identity:114/508 - (22%)
Similarity:184/508 - (36%) Gaps:146/508 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 LDKNQRRSQRNQRNPYPG---MPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVD 177
            ||....|.:..:..|..|   ....|....:.|::|:.|...|:|||:.|.||..:.:::.|.:.
  Rat    20 LDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

  Fly   178 VHRKENV------------GSLEKSITIYG----------------------NPENCTNACKRIL 208
            :.:.::.            |::|....::|                      .|:...|. .||.
  Rat    85 LSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNP-DRIK 148

  Fly   209 EVMQQEAISTNKGELSPECSEIC--LKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDI 271
            :.:.....:|......|..:...  :||:..|:..|.||||.|.|:|.||:.:...:.:|...| 
  Rat   149 QTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD- 212

  Fly   272 NSFNL-ERIITVKGLIENMSRAENQISTKLRQSYENDLQAMAPQSLMFPGLHPMAMMSTPGNGMV 335
             ..|| ||::||.|..|...:|...|..|:::    |.|:.:..::.:..:......|.|.....
  Rat   213 -GINLQERVVTVSGEPEQNRKAVELIIQKIQE----DPQSGSCLNISYANVTGPVANSNPTGSPY 272

  Fly   336 FNTSMPFPSCQSFA----------MSKTPASVVPPVFPNDLQETT--------YLYIPNN----- 377
            .||:...|:..:.|          ::..|| |:.....|||...|        |.|..|.     
  Rat   273 ANTAEVLPTAAAAAGLLGHANLAGVAAFPA-VLSGFTGNDLVAITSALNTLASYGYNLNTLGLGL 336

  Fly   378 ----AVGAII-------------------------------GTRGSHIRSIMRFSNASLKIAP-- 405
                |.||:.                               ||.|:       |:..||..|.  
  Rat   337 SQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGT-------FALGSLAAATAA 394

  Fly   406 ----LDADKPLDQQTERKVTIVGTPEGQWKAQYMIFEKMREEGFMCGTDDVRLTVELLVASSQVG 466
                ..|..||...     .|:||            ||..:     |:.||   ||:.|..:.||
  Rat   395 TNGYFGAASPLAAS-----AILGT------------EKSTD-----GSKDV---VEIAVPENLVG 434

  Fly   467 RIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSVQSAQ 519
            .|:||||:.:.|.|.:||:.|::.:.....|  |.....|.|.|...:.|:||
  Rat   435 AILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVTITGTPAATQAAQ 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM <37..>146 CDD:223796 6/32 (19%)
RRM2_VICKZ 42..118 CDD:240805 1/1 (100%)
KH-I 145..208 CDD:238053 17/96 (18%)
KH-I 232..296 CDD:238053 24/64 (38%)
KH-I 369..436 CDD:238053 20/120 (17%)
KH-I 455..522 CDD:238053 23/65 (35%)
Nova1XP_006240131.1 KH-I 49..121 CDD:412160 14/71 (20%)
KH-I 172..241 CDD:412160 25/70 (36%)
KH-I 422..492 CDD:412160 25/69 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335345
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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