DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Imp and nova1

DIOPT Version :9

Sequence 1:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001096339.1 Gene:nova1 / 100124925 XenbaseID:XB-GENE-949963 Length:508 Species:Xenopus tropicalis


Alignment Length:506 Identity:116/506 - (22%)
Similarity:182/506 - (35%) Gaps:141/506 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 LDKNQRRSQRNQRNPYPG---MPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVD 177
            ||....|.:..:..|..|   ....|....|.|::|:.|...|:|||:.|.||..:.:::.|.:.
 Frog    20 LDPPDSRKRPLEAPPEAGSTKRTNTGEDGQFFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

  Fly   178 VHRKENV--GSLEKSITIYGNPENCTNA-----CKRILEVMQQEAISTNKGELSPE--------- 226
            :.:.::.  |:.|:...|.|..| ..||     .::|.|:.|..|.:.....|.|:         
 Frog    85 LSKSKDFYPGTTERVCLIQGTVE-ALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIK 148

  Fly   227 ----------------------CSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSIN 269
                                  .|::  ||:..|:..|.||||.|.|:|.:|:.:...:.:|...
 Frog   149 QTLSSLPPATKSSPSDPMTISRASQV--KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKP 211

  Fly   270 DINSFNL-ERIITVKGLIENMSRAENQISTKLRQ----------SYEN----------------D 307
            |  ..|| ||::||.|..|...:|...|..|:::          ||.|                :
 Frog   212 D--GINLQERVVTVSGEPEQNRKAVELIVQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYAN 274

  Fly   308 LQAMAPQSLMFPGL-----------HPMAMMSTPGNGMV-----FNTSMPF------------PS 344
            ...:.|.:....||           .|..:....||.:|     .||...:            .:
 Frog   275 TAEVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQA 339

  Fly   345 CQSFAMSKTPASVVPPVFPNDLQETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAP---- 405
            ..:.|::...||..|..........||........|...|..|:       |:..||..|.    
 Frog   340 AATGALAAAAASANPAAAAAANLLATYASEATAGGGTAAGAAGT-------FALGSLAAATAATN 397

  Fly   406 --LDADKPLDQQTERKVTIVGTPEGQWKAQYMIFEKMREEGFMCGTDDVRLTVELLVASSQVGRI 468
              ..|..||...     .|:||            ||..:     |:.||   ||:.|..:.||.|
 Frog   398 GYFGAASPLAAS-----AILGT------------EKSTD-----GSKDV---VEIAVPENLVGAI 437

  Fly   469 IGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSVQSAQ 519
            :||||:.:.|.|.:||:.|::.:.....|  |.....|.|.|...:.|:||
 Frog   438 LGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVTITGTPAATQAAQ 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ImpNP_001245616.1 RRM <37..>146 CDD:223796 7/32 (22%)
RRM2_VICKZ 42..118 CDD:240805 1/1 (100%)
KH-I 145..208 CDD:238053 18/69 (26%)
KH-I 232..296 CDD:238053 23/64 (36%)
KH-I 369..436 CDD:238053 15/72 (21%)
KH-I 455..522 CDD:238053 23/65 (35%)
nova1NP_001096339.1 PCBP_like_KH 51..117 CDD:239089 18/66 (27%)
PCBP_like_KH 173..238 CDD:239089 23/68 (34%)
KH-I 424..489 CDD:238053 24/68 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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