DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment stx and Midn

DIOPT Version :9

Sequence 1:NP_001259426.1 Gene:stx / 32005 FlyBaseID:FBgn0052676 Length:1122 Species:Drosophila melanogaster
Sequence 2:NP_001178506.1 Gene:Midn / 314623 RGDID:1309629 Length:505 Species:Rattus norvegicus


Alignment Length:1020 Identity:203/1020 - (19%)
Similarity:281/1020 - (27%) Gaps:615/1020 - (60%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 TTSAVVASPMTINLNISTTTGGNFGVSVEPHISVESLKKIIAKKLKVAKDRICLLHREKELQDGT 122
            :|:|..|:||  :|.|.:|||..:.:||....:||.|:|.::::|||.|:|:.|||::..|..|.
  Rat    23 STTAESAAPM--SLAIHSTTGTRYDLSVPHDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGK 85

  Fly   123 LRDHNLMDGSKIILIPNVETGLLAQ--RPENTVMQALESLNDA---------------------- 163
            |::..:.||||:.|:|.||.||::|  |||.:||||||||.:.                      
  Rat    86 LQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQPPATPGPGRAAGGGFRKYRLI 150

  Fly   164 ---------------------QVNDFLSGKTPLNLSMRLGDHMMLIQLQLSTVNPAGGGAATVAP 207
                                 ||:|||||::||.|::|:|||||.:||||         ||..||
  Rat   151 LFKRPWHRQGPQSPERGGERPQVSDFLSGRSPLTLALRVGDHMMFVQLQL---------AAQHAP 206

  Fly   208 VAGGASGSSINAAASTTSTVPVMPAGTGCSGANSTSLSSSAVLAAAAAGVGGSTGTSGSGTSSSS 272
                                                |....|||||||                 
  Rat   207 ------------------------------------LQHRHVLAAAAA----------------- 218

  Fly   273 SSTSSSSSSSSSSSRTRSSGQRSSGRIGHGHVHSHQHPSLHAANWHGFSHGHGHGHSHGNGHGHH 337
                                                                             
  Rat   219 ----------------------------------------------------------------- 218

  Fly   338 HHHHHHHHHHHHHHNASAVAAGSGGGMSSLRKMYGDLPSSSGASGSAPATGTGQSQSSSTLNGPD 402
                               ||.:..|.||:                                   
  Rat   219 -------------------AAAAARGDSSI----------------------------------- 229

  Fly   403 LTKLLIKGGIQNIVNSFALKDAGANARPVANGGSGSSPGKPVLEQSPIKSLSNLVSSPIKMTTIK 467
                                     |.||      |||.:||                       
  Rat   230 -------------------------ATPV------SSPCRPV----------------------- 240

  Fly   468 NIPLPTTAATSSSSSCNCSSAAPSSSSSTSSGACATGGCQQDPIAAKLTSCLCTRLPTPSVAPPV 532
                              ||||                                |:|..|.:|  
  Rat   241 ------------------SSAA--------------------------------RVPPVSSSP-- 253

  Fly   533 ATLVAPAPVARSGSTSSPSKCPESSCSGANAGFAARSTLAGTRVTFSGNSMLHKTGNNRITRTKH 597
            ::.|:|:||.                             |||                       
  Rat   254 SSPVSPSPVT-----------------------------AGT----------------------- 266

  Fly   598 RHYHGQGHGHGHGNGHSSSSSSSSSSSSSHFFNHACAGNQPSVNAAAFATSSSSSSSSPSSSSSS 662
                                          |.:||                  :|::.|..:..|
  Rat   267 ------------------------------FQSHA------------------ASTTCPEQTDCS 283

  Fly   663 PSKRRKLEQGMGAGAVGATAATATAAATVALPASTSATTAEPDDSLLGVSDTRTLAEASRNLTQT 727
            |                              ||| |.||:.|     |.|.|             
  Rat   284 P------------------------------PAS-SNTTSTP-----GSSPT------------- 299

  Fly   728 LRKLSKEVFTNKIDLSGAGVVSSGRSSSSGATSSGAASGEEAPRKSGSGAVIESMKNHGKGIYSG 792
                                                      ||....||||||..||..|::||
  Rat   300 ------------------------------------------PRSRKPGAVIESFVNHAPGVFSG 322

  Fly   793 TFSGTLNPALQDRFGRPKRDISTVIHILNDLLSATPQYGRGARISFEAPTTGSVSGSGSGSGSSG 857
            ||||||:|..||..|||:|||.|::.|||||||||..|                           
  Rat   323 TFSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHY--------------------------- 360

  Fly   858 SSSTTSSGSGLHHGSRSKMYSSKHHNCAKCNSRAQQQQQQSATLASGSGGSCSFRDCPSYHSSSA 922
                        .|..:.:...:.|  |:|                                |.|
  Rat   361 ------------QGMPASLTQLRCH--AQC--------------------------------SPA 379

  Fly   923 ATKASTSSKSSSHSCCQTAEAPSSMTSQSNGCTCRYRRDDGQGEREREHTCQKCTVELANMKTRS 987
            :.....:.|::|   |:....||.:..||....|:     ..|:|.|         :..|..||.
  Rat   380 SPAPDLTPKTTS---CEKLATPSLLQGQSQIRMCK-----PPGDRLR---------QTENRATRC 427

  Fly   988 KMDQLRLVMQQHKQKREARKLKSGPYATAASASAADSLSSIAAGG 1032
            |:::|:|::||.:.:|:||:...|||....|..|..|.||.:.||
  Rat   428 KVERLQLLLQQKRLRRKARRDARGPYHWTPSRKAGRSDSSSSGGG 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stxNP_001259426.1 UBQ 66..145 CDD:320785 33/78 (42%)
MidnNP_001178506.1 Ubl_midnolin 32..101 CDD:340502 28/70 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 155..176 2/20 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 228..305 43/408 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 440..485 13/33 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342171
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_28KXC
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 175 1.000 Inparanoid score I3973
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1159802at2759
OrthoFinder 1 1.000 - - FOG0009367
OrthoInspector 1 1.000 - - oto96211
orthoMCL 1 0.900 - - OOG6_110744
Panther 1 1.100 - - LDO PTHR23010
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.760

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