DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rph and AT1G03370

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_171836.3 Gene:AT1G03370 / 839519 AraportID:AT1G03370 Length:1020 Species:Arabidopsis thaliana


Alignment Length:148 Identity:47/148 - (31%)
Similarity:72/148 - (48%) Gaps:23/148 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 LDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEP 434
            |...:|.||:|||||..|.:|||.:|.:....:        |||.|.|..||::.|...| ||  
plant     3 LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRS--------RTKVVKKNLNPKWTEDFSF-GV-- 56

  Fly   435 EELGNSLIYVALFDDDKY-GHDFLGAAKVCLSTVHSTSQYRISV---PLGVEDQYSNAAEMAQNW 495
            ::|.:.|: |::.|:||| ..||:|..:|.:|.|.......:..   ||       |..:.....
plant    57 DDLNDELV-VSVLDEDKYFNDDFVGQVRVSVSLVFDAENQSLGTVWYPL-------NPKKKGSKK 113

  Fly   496 PNGKMLLSLCYNTKRRAL 513
            ..|::||.:|::.|...|
plant   114 DCGEILLKICFSQKNSVL 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000 38/107 (36%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 5/15 (33%)
AT1G03370NP_171836.3 C2 2..104 CDD:425499 38/112 (34%)
VASt 252..401 CDD:464975
C2 535..637 CDD:425499
PH-GRAM_C2-GRAM 699..812 CDD:270039
VASt 851..992 CDD:464975
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.