DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rph and Sytl3

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_113572.1 Gene:Sytl3 / 83672 MGIID:1933367 Length:607 Species:Mus musculus


Alignment Length:688 Identity:146/688 - (21%)
Similarity:250/688 - (36%) Gaps:201/688 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 EPLRPEEQEAIISVIRRNEEIEVAERQRVGRLVERVEKI-----KQHAVERGPNCCRLCGDTFGI 97
            |..:..|::.|:.|:.|::.::..|.:||.:|...::.:     |..:.|....||..|....|:
Mouse     8 ESFKELERDIILRVLYRDQTVQSTEEERVRKLKSHLQHLRWKGAKSSSQEYKEKCCARCQRALGL 72

  Fly    98 LRPQRILCEDCRQSVCTKCSVDINIRYHTSERSREIWLCRICSETREMWKKSGAWFF-------- 154
            |..:..:|:.|...||::|.|.:        |....|.|.:|.|.|.:..|:|.|||        
Mouse    73 LLNRGAVCQGCSHRVCSECRVFL--------RRTRAWKCTVCFEDRNVKIKTGEWFFEERARKFP 129

  Fly   155 ----------KGLPKYDMPRSASATPIPNPGP---------------GSMAGDTRAVQSCHATPT 194
                      |.|..|......|..| |.|.|               |...|..::|::...:.|
Mouse   130 TAGRRETAGAKLLQSYQRLSKISVVP-PTPPPFSESQCSSSSRLQELGHFRGFNKSVENLFLSVT 193

  Fly   195 RPARVKKLTIRVNDSSSSSS----------GHSEPEDEVDTGVGIGVGVVGGGMAKGIASTRLQR 249
              .:::||:...||.:|...          ||:|...:.||.|             .:.|.:...
Mouse   194 --TQMRKLSKSQNDMTSEKHLLAMDPRQCVGHTERRSQSDTAV-------------NVTSRKAST 243

  Fly   250 EDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQQSQRPSE----------CPEYDSVSMSKLRRES 304
            .|..:.                      |:::..:.|.:          .|.:.:|.       |
Mouse   244 PDILKA----------------------FHQEDPKHPPDPVLKQDTPPSSPTHSAVF-------S 279

  Fly   305 SFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQQQLQQHCRDPLLGWLEIAISYREAFHS 369
            ..||.||:.|..|.....|:..|.:                       :.|.:|.||.|.....|
Mouse   280 GGLRHGSLISINSTCTEMGNFDNAN-----------------------VTGEIEFAIHYCVKSCS 321

  Fly   370 LDCTMVRARDLP-AMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVE 433
            |:..:...::|. ..:.....:||.|..:: |:..::..|  :|:....|.:|.|.|||:: .|:
Mouse   322 LEICIKTCKNLAYGEEKKRKCNPYVKTYLL-PDRSSQGKR--KTRVQKNTLDPTFEETLKY-QVD 382

  Fly   434 PEELGNSLIYVALFDDDKYGHDFLG--AAKVCLSTVHSTSQYRISVPLGVEDQYSNAAEMAQNWP 496
            |.:|....:.|:::        .||  |.:|.|.        .:.:||.:.|...:.|:.|:.:|
Mouse   383 PGQLMTRRLQVSVW--------HLGTLARRVFLG--------EVILPLAMWDFKDSTAQNARWYP 431

  Fly   497 ---------------NG------KMLLSLCYNTKRRA----LVVNVKQCINLMAMDN-----NGS 531
                           ||      |::|.......:.|    |.:|.:.|:.::...|     :|:
Mouse   432 LRAKAEKYEENIPQNNGELAVRAKLVLPAGPRKPQEAQEGQLALNGQLCLVVLGAKNLPVRSDGT 496

  Fly   532 SDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFE-ASPHDLNKEMLILTVWDKDLGKSND 595
            .:.|||..|.....:..:.|:.|..:...|.:...|.|. .|...|.:..|.|||||:.:...||
Mouse   497 LNSFVKGCLTLPNQQKLRVKSPVLKKQACPQWKHSFVFNGVSSSQLRQSTLELTVWDQAIFGMND 561

  Fly   596 -FLGSLQLGAQSKGERLQQWLDCIRLPDHFHE---KWH 629
             .||..:||  |||       .....||...:   :||
Mouse   562 RLLGEARLG--SKG-------GAAGCPDSGSQSKLQWH 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600 27/105 (26%)
C2A_Rabphilin_Doc2 354..477 CDD:176000 29/125 (23%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 38/145 (26%)
Sytl3NP_113572.1 PHD_SF 14..123 CDD:389947 32/116 (28%)
FYVE_like_SF 60..108 CDD:333710 15/55 (27%)
DUF4195 <200..>292 CDD:372746 21/133 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 221..279 12/99 (12%)
C2 306..433 CDD:387358 35/146 (24%)
C2B_SLP_1-2-3-4 447..607 CDD:175987 40/153 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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