DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and AT5G48060

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_199617.1 Gene:AT5G48060 / 834858 AraportID:AT5G48060 Length:1036 Species:Arabidopsis thaliana


Alignment Length:480 Identity:103/480 - (21%)
Similarity:168/480 - (35%) Gaps:144/480 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 ASTRLQREDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQQSQRPSECPE---YDSVS--MSKLRR 302
            ||.....||:.......|::||....|..|::|.          |||.|   .:.|.  :.||.|
plant   153 ASASGTEEDTADSETEDSLKSFASAEEEDLADSV----------SECVEGKKSEEVKEPVQKLHR 207

  Fly   303 ESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQQ---QLQQHCRDPL----------- 353
            :..|.|...:.   ||...|....:.:....::...|.|.|   .||.:....|           
plant   208 QEVFARPAPMQ---SIRLRSRENPHEAQKPMSRGANQLHPQNPNHLQSYGDTDLDDFKVKDMNLD 269

  Fly   354 LG--WLEIAISYR--------EAFHSLDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTK-YT 407
            ||  |.......|        |....|...:|:|::||.....|..|||.::.:...:..|| :.
plant   270 LGERWPNPNAGERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFD 334

  Fly   408 RWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYGH-DFLGAAKVCLSTVHSTS 471
            |        ||..||:|:...|.   .|.:.:|::.|.:.|.:..|. |.||      ..|...:
plant   335 R--------KTTIPEWNQVFAFT---KERIQSSVLEVFVKDKETLGRDDILG------KVVFDLN 382

  Fly   472 QYRISVPLGVEDQYSNAAEMAQNW------------PNGKMLLSL-------------------- 504
            :....||..        :.:|..|            ..|:::|::                    
plant   383 EIPTRVPPN--------SPLAPQWYRLEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADSAS 439

  Fly   505 -----CYNTKRRALV--------VNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSV-K 555
                 .:|.:.:..|        |||.:..:::..|.|...|.|||..:     ..:..|||: .
plant   440 VHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMIPSDRNRLPDVFVKASV-----GMQTLKTSICS 499

  Fly   556 WRTLNPIYNEEFYF-EASPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIR 619
            .:|.||::.|:..| .|.|.:   |.|:::|.|:.....::.:|.:.|......:||        
plant   500 IKTTNPLWKEDLVFVVAEPFE---EQLVISVEDRVHTSKDEVIGKITLPMNVFEKRL-------- 553

  Fly   620 LPDH--FHEKWH--------CLAPD 634
              ||  .|.:|.        .|.||
plant   554 --DHRPVHSRWFNLDKYGTGVLEPD 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600
C2A_Rabphilin_Doc2 354..477 CDD:176000 32/134 (24%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 34/176 (19%)
AT5G48060NP_199617.1 C2A_MCTP_PRT_plant 6..133 CDD:175989
C2B_MCTP_PRT_plant 295..423 CDD:176024 33/152 (22%)
C2C_MCTP_PRT_plant 460..613 CDD:175986 34/135 (25%)
C2D_MCTP_PRT_plant 626..753 CDD:176025
PRT_C 881..1036 CDD:285560
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X85
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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