DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rph and AGD13

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_567292.1 Gene:AGD13 / 825881 AraportID:AT4G05330 Length:336 Species:Arabidopsis thaliana


Alignment Length:128 Identity:36/128 - (28%)
Similarity:58/128 - (45%) Gaps:18/128 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   513 LVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLN 577
            |.|.:|:..|| |:.:..||||:|.:.|     ..:|.:|:|....|||::|:|..... |....
plant   182 LKVTIKKGTNL-AIRDMMSSDPYVVLNL-----GKQKLQTTVMNSNLNPVWNQELMLSV-PESYG 239

  Fly   578 KEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHE----KWHCLAPDNP 636
            .  :.|.|:|.|...::|.:|...:..|........:.|    |:.|.:    || ..:.|||
plant   240 P--VKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGD----PEMFGDMQIGKW-LKSHDNP 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000
C2B_Rabphilin_Doc2 499..631 CDD:176030 33/121 (27%)
AGD13NP_567292.1 ArfGap 18..124 CDD:350058
C2_ArfGAP 179..323 CDD:176003 36/128 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.