DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and C2

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_188425.2 Gene:C2 / 821323 AraportID:AT3G17980 Length:177 Species:Arabidopsis thaliana


Alignment Length:104 Identity:30/104 - (28%)
Similarity:55/104 - (52%) Gaps:9/104 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   513 LVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLN 577
            |.:.:|:.:||...|.: ||||:|.:::     ..:|.||.|..:.:||.:||:.....:..:|.
plant    20 LRIRIKRGVNLAVRDIS-SSDPYVVVKM-----GKQKLKTRVINKDVNPEWNEDLTLSVTDSNLT 78

  Fly   578 KEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLD 616
               ::|||:|.|:...:|.:|..:...:...|.|:..||
plant    79 ---VLLTVYDHDMFSKDDKMGDAEFEIKPYIEALRMQLD 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000
C2B_Rabphilin_Doc2 499..631 CDD:176030 30/104 (29%)
C2NP_188425.2 C2_ArfGAP 17..160 CDD:176003 30/104 (29%)
Blue background indicates that the domain is not in the aligned region.

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