DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and Syt8

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_445777.2 Gene:Syt8 / 60566 RGDID:68399 Length:387 Species:Rattus norvegicus


Alignment Length:321 Identity:93/321 - (28%)
Similarity:138/321 - (42%) Gaps:36/321 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   320 DSSGSGSNNSGNSQTQSQYQQHQQQLQQHCRDPLLG----WLEIAISYREAFHSLDCTMVRARDL 380
            |....|..::.||.|     .|..|....|.:|..|    |.::.:|....|.|.: ..|..|..
  Rat    71 DKETVGLGSARNSTT-----THLVQPDVECLEPCSGGDQPWGQLLLSLEYDFGSQE-IRVGLRQA 129

  Fly   381 PAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVA 445
            ..:.|.|.||||.::::     .|:..|...||....|..|.|.||..|: |.|.||..:.:.|.
  Rat   130 KNLKAEGTADPYARVSV-----STQAGRRHETKVHRGTLCPMFEETCCFL-VPPAELPKATLKVQ 188

  Fly   446 LFDDDKYG-HDFLGAAKVCLSTVH----STSQYRISVPLGVEDQYSNAAEMAQNWPNGKMLLSLC 505
            |.|..::. |:.||..::.|.||.    ..|.|::..|...|.:..           |::..||.
  Rat   189 LLDFKRFSEHEPLGELQLPLGTVDLQHVLESWYQLGPPGSTESEQM-----------GELCFSLR 242

  Fly   506 YNTKRRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFE 570
            |......|.|.:.:...|    |.|.::.:||:||..:..|.||:|||.|..|.||.:||.|.|.
  Rat   243 YVPSSGRLTVVILEARGL----NPGLAEAYVKVQLILNQRKWKKNKTSSKKGTTNPYFNEAFVFL 303

  Fly   571 ASPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCL 631
            .....|....|:|.||.:.|....:.:|.:.||.::.|:.||.|.|.:........:||.|
  Rat   304 VPVSQLQSMDLVLAVWARGLQLLAEPVGKVLLGPRASGQPLQHWADMLAHARRPIAQWHHL 364

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600
C2A_Rabphilin_Doc2 354..477 CDD:176000 38/131 (29%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 42/131 (32%)