DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rph and Syt7

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_006231127.1 Gene:Syt7 / 59267 RGDID:62013 Length:687 Species:Rattus norvegicus


Alignment Length:580 Identity:145/580 - (25%)
Similarity:220/580 - (37%) Gaps:150/580 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 PKYDMPRSASATPIPNPGPGSMA--GDTRAVQSCH----------------ATPT---------- 194
            |..|..||..|.| ..||....|  |..|.||| |                :|.|          
  Rat   150 PGEDALRSGGAAP-SEPGSSGKAGRGRWRMVQS-HLAAGKLNLSNFEDSTLSTATTLESIPSSAG 212

  Fly   195 -----RPARVKKLTIRVNDSSSSSSGH--SEPEDEVDTG---------VGIGVGVVGGGMAK-GI 242
                 ||..:.:........|.:..|.  |:|......|         .|......|.|.|: |.
  Rat   213 EPKCQRPRTLMRQQSLQQPLSQNQRGRQPSQPTTSQSLGQLQAHAASAPGSNPRAYGRGQARQGT 277

  Fly   243 ASTRLQREDSFRLRA--------YGSIR-------SFIDGGERKLS-------NSFFFN------ 279
            ::....|....|.|:        .|.||       ||::|....||       ...|.|      
  Rat   278 SAGSKYRAAGGRSRSNPGSWDHVVGQIRNRGLDMKSFLEGRMVVLSLVLGLSEQDDFANIPDLQN 342

  Fly   280 --RQQSQR-------------------PSECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSG 323
              .||:|.                   |.:.|..:|...::.|...|.|.....|....:|..| 
  Rat   343 PGTQQNQNAQGDKRLPAGGKAVNTAPVPGQTPHDESDRRTEPRSSVSDLVNSLTSEMLMLSPGS- 406

  Fly   324 SGSNNSGNSQTQSQYQQHQQQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGL 388
                             .:.:..:.|....||.::.::.|.....:|...:::|::|||.|.:|.
  Rat   407 -----------------EEDEAHEGCSRENLGRIQFSVGYNFQESTLTVKVMKAQELPAKDFSGT 454

  Fly   389 ADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYG 453
            :||:.|:.::..:.|.     ..||...|..||.:|||..|.|...|::...::|:.:.|.|::.
  Rat   455 SDPFVKIYLLPDKKHK-----LETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFS 514

  Fly   454 -HDFLGAAKVCLSTVHSTSQYRISVPLGVEDQYSNAAEMAQNWPN-----------GKMLLSLCY 506
             :|.:|               .:|:||...|    ..:|...|.:           |::||||||
  Rat   515 RNDPIG---------------EVSIPLNKVD----LTQMQTFWKDLKPCSDGSGSRGELLLSLCY 560

  Fly   507 NTKRRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEA 571
            |....:::||:.:..||.|||..|:|||:||:.|.....:.:|.||..|.|.||||:||.|.|:.
  Rat   561 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDI 625

  Fly   572 SPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCL 631
            ....|.:..:|:||.|||....||.:|.:.|..:|....::.|.|.|..|.....:||.|
  Rat   626 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQL 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600 6/13 (46%)
C2A_Rabphilin_Doc2 354..477 CDD:176000 30/123 (24%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 52/131 (40%)
Syt7XP_006231127.1 C2A_Synaptotagmin-7 419..543 CDD:176032 36/147 (24%)
C2B_Synaptotagmin-7 551..686 CDD:176050 54/135 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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