DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rph and Syt7

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:XP_030106854.1 Gene:Syt7 / 54525 MGIID:1859545 Length:719 Species:Mus musculus


Alignment Length:580 Identity:145/580 - (25%)
Similarity:220/580 - (37%) Gaps:150/580 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 PKYDMPRSASATPIPNPGPGSMA--GDTRAVQSCH----------------ATPT---------- 194
            |..|..||..|.| ..||....|  |..|.||| |                :|.|          
Mouse   182 PGEDALRSGGAAP-SEPGSSGKAGRGRWRMVQS-HLAAGKLNLSNFEDSTLSTATTLESIPSSAG 244

  Fly   195 -----RPARVKKLTIRVNDSSSSSSGH--SEPEDEVDTG---------VGIGVGVVGGGMAK-GI 242
                 ||..:.:........|.:..|.  |:|......|         .|......|.|.|: |.
Mouse   245 EPKCQRPRTLMRQQSLQQPLSQNQQGRQPSQPTTSQSLGQLQAHAASAPGSNPRAYGRGQARQGT 309

  Fly   243 ASTRLQREDSFRLRA--------YGSIR-------SFIDGGERKLS-------NSFFFN------ 279
            ::....|....|.|:        .|.||       ||::|....||       ...|.|      
Mouse   310 SAGSKYRAAGGRSRSNPGSWDHVVGQIRNRGLDMKSFLEGRMVVLSLVLGLSEQDDFANIPDLQN 374

  Fly   280 --RQQSQR-------------------PSECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSG 323
              .||:|.                   |.:.|..:|...::.|...|.|.....|....:|..| 
Mouse   375 PGTQQNQNAQGDKRLPAGGKAVNTAPVPGQTPHDESDRRTETRSSVSDLVNSLTSEMLMLSPGS- 438

  Fly   324 SGSNNSGNSQTQSQYQQHQQQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGL 388
                             .:.:..:.|....||.::.::.|.....:|...:::|::|||.|.:|.
Mouse   439 -----------------EEDEAHEGCSRENLGRIQFSVGYNFQESTLTVKVMKAQELPAKDFSGT 486

  Fly   389 ADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYG 453
            :||:.|:.::..:.|.     ..||...|..||.:|||..|.|...|::...::|:.:.|.|::.
Mouse   487 SDPFVKIYLLPDKKHK-----LETKVKRKNLNPHWNETFLFEGFPYEKVVQRVLYLQVLDYDRFS 546

  Fly   454 -HDFLGAAKVCLSTVHSTSQYRISVPLGVEDQYSNAAEMAQNWPN-----------GKMLLSLCY 506
             :|.:|               .:|:||...|    ..:|...|.:           |::||||||
Mouse   547 RNDPIG---------------EVSIPLNKVD----LTQMQTFWKDLKPCSDGSGSRGELLLSLCY 592

  Fly   507 NTKRRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEA 571
            |....:::||:.:..||.|||..|:|||:||:.|.....:.:|.||..|.|.||||:||.|.|:.
Mouse   593 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDI 657

  Fly   572 SPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCL 631
            ....|.:..:|:||.|||....||.:|.:.|..:|....::.|.|.|..|.....:||.|
Mouse   658 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQL 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600 6/13 (46%)
C2A_Rabphilin_Doc2 354..477 CDD:176000 30/123 (24%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 52/131 (40%)
Syt7XP_030106854.1 PHA03307 138..>343 CDD:223039 35/162 (22%)
C2A_Synaptotagmin-7 451..575 CDD:176032 36/147 (24%)
C2B_Synaptotagmin-7 583..718 CDD:176050 54/135 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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