DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and rph3al

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001011007.1 Gene:rph3al / 496416 XenbaseID:XB-GENE-942974 Length:325 Species:Xenopus tropicalis


Alignment Length:229 Identity:92/229 - (40%)
Similarity:136/229 - (59%) Gaps:37/229 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 NNTANKFVCPSDRQLALRAKLKAGWS-------SSKTSEPLRPEEQEAIISVIRRNEEIEVAERQ 64
            ||.::::|||:||||||||||:||||       ..:.::.|...|.:.|:.||||.|:::..|:|
 Frog     7 NNGSDQWVCPNDRQLALRAKLRAGWSVHTFQTEKQRKNQSLNQNEIDVILQVIRRAEKVDTLEQQ 71

  Fly    65 RVGRLVERVEKIKQHAVERGPNCCRLCGDTFGILRPQRILCEDCRQSVCTKCSVDINIRYHTSER 129
            |:||||||:|.::::.:..|.:.|.|||:..|.|....:.|:||::.|||||.::.     ...:
 Frog    72 RIGRLVERLENMRKNVMGNGMSQCLLCGELLGFLGTTSVFCQDCKKKVCTKCGIET-----VGSQ 131

  Fly   130 SREIWLCRICSETREMWKKSGAWFFKGLPKYDMPRSASATPIPNPGPGSMAGD--TRAVQSCHAT 192
            .|::|||:||||.||:||:|||||:||||||.:|...|          :..|:  .|.:|..|  
 Frog   132 KRQVWLCKICSEQREVWKRSGAWFYKGLPKYILPMKFS----------NKTGELHLRPLQPDH-- 184

  Fly   193 PTRPARVKKLTIR---------VNDSSSSSSGHS 217
            ||:.|  |..:.|         |:..|.|.|.||
 Frog   185 PTQEA--KNSSNRTYTWAKGKVVSSDSESDSEHS 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710 40/87 (46%)
C2A_Rabphilin_Doc2 354..477 CDD:176000
C2B_Rabphilin_Doc2 499..631 CDD:176030
rph3alNP_001011007.1 FYVE_2 45..159 CDD:426716 51/118 (43%)
Blue background indicates that the domain is not in the aligned region.

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