DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and syt4

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001164985.1 Gene:syt4 / 447980 XenbaseID:XB-GENE-5963049 Length:424 Species:Xenopus tropicalis


Alignment Length:370 Identity:93/370 - (25%)
Similarity:156/370 - (42%) Gaps:75/370 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 VSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQQQLQQHCRDPL------ 353
            :.:.|.....:|.:...|.||..:.|.|                   |.||.:..:|.:      
 Frog    94 LDLEKRDLNGNFPKANKVRSSPDLEDFS-------------------QPQLPEKDKDSVSPESVK 139

  Fly   354 -------------LGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGL-ADPYCKLNIITPEAHT 404
                         ||.|..|:.|.....:....:..||.|||||...: :|||.|:.|:..:.|.
 Frog   140 SNASVVSLDKQDKLGTLFFALEYNFEKKAFVVNIKEARSLPAMDEQSMTSDPYIKMTILPEKKHK 204

  Fly   405 KYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYGH-DFLGAAKVCLSTVH 468
                 .:|:.:.||.:|.|:||..|.|:...::.:.:::..:...|::.. |.:|          
 Frog   205 -----VKTRVLRKTLDPAFDETFTFYGIPYSQVQDLVLHFIILSFDRFSRDDVIG---------- 254

  Fly   469 STSQYRISVPL-GVE--------DQYSNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLM 524
                 .:|.|| |:|        ::..|...:.::...|::|:||||.:....|.|.|.:..:|.
 Frog   255 -----EVSFPLSGIELSDGRVLMNREINKRNVRKSAGRGELLISLCYQSTTNTLTVVVLKARHLP 314

  Fly   525 AMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFE---ASPHDLNKEMLILTVW 586
            ..:.:|.|||:||:.|.....:..|.||.||..|.|.::||.|.|:   ....|::.|.|::   
 Frog   315 KAEVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCEGLEDISVEFLVM--- 376

  Fly   587 DKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCL 631
            |.|.|..|:.:|.|.||:.:.|...:.|.:....|.....|||.|
 Frog   377 DSDRGSRNEVIGRLILGSSADGTGGEHWKEICEHPRRQIAKWHML 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000 30/124 (24%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 44/134 (33%)
syt4NP_001164985.1 C2A_Synaptotagmin-4-11 152..278 CDD:176034 35/145 (24%)
C2B_Synaptotagmin-4 287..422 CDD:176049 46/138 (33%)
Blue background indicates that the domain is not in the aligned region.

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