DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and Syt4

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_477464.1 Gene:Syt4 / 40876 FlyBaseID:FBgn0028400 Length:474 Species:Drosophila melanogaster


Alignment Length:499 Identity:114/499 - (22%)
Similarity:191/499 - (38%) Gaps:122/499 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 RSASATP------IPNPGPGSMAGDTRAVQSCHATPTRPARVKKLTIRVNDSSSSSSGHSEPEDE 222
            ||.|..|      .|:|..|...|....:|....:|     :.:..::.::.....:.|:|.:: 
  Fly    65 RSPSGQPPHYLKKSPSPTGGKQMGLLSPMQDQSTSP-----IAQPNVKYSEEGDGPAQHAEQQN- 123

  Fly   223 VDTGVGIGVGVVGGGMAKGIASTRLQREDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQQSQRPS 287
                 |..:.||.|                             :|.:..|.||...:      |.
  Fly   124 -----GNQLTVVDG-----------------------------NGLKHSLHNSLHHS------PV 148

  Fly   288 ECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQQQLQQHCRDP 352
            |.                 :..|||:.  ::.|.|   ..|........||.:            
  Fly   149 ET-----------------IANGSVTI--TLDDHS---LTNGKELTVTDQYGK------------ 179

  Fly   353 LLGWLEIAISYREAFHSLDCTMVRARDLPAMDAA---------------GLADPYCKLNIITPEA 402
             ||.:...:.|....::|..:::|.|.||....:               ...|||.||.::..:.
  Fly   180 -LGTIYFKLRYLAERNALMVSIIRCRGLPCKGGSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQ 243

  Fly   403 HTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYGHDFLGAAKVC-LST 466
            |.     .:|:.|..||||.::|...|.|:...:|.|..::..:...|:|..|.:....|| |::
  Fly   244 HK-----VKTRVVRNTRNPVYDEDFTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCPLTS 303

  Fly   467 VHSTSQYRISVPLGVEDQYSNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGS 531
            :......:.::.:..|.|..:....||.  .|::|:|||:......|.|.:.:..||..||..|.
  Fly   304 IEIGDISKEALSISKEIQPRSLKIRAQG--RGELLISLCWQPAAGRLTVVLLKARNLPRMDVTGL 366

  Fly   532 SDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFE--------ASPHDLNKEMLILTVWDK 588
            :||:|||.|..:..:..|.||.||.|||:|::||.|.|:        ||...::.|:::|. ||:
  Fly   367 ADPYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNESFAFDIPAAEGAGASLEGVSLELMLLD-WDR 430

  Fly   589 DLGKSNDFLGSLQLGA-QSKGERLQQWLDCIRLPDHFHEKWHCL 631
              ...|:.:|.|:||. .|....|..|.:....|.....:||.|
  Fly   431 --VTKNEVIGRLELGGPNSSSTALNHWNEVCNSPRRQIAEWHKL 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600 4/13 (31%)
C2A_Rabphilin_Doc2 354..477 CDD:176000 31/138 (22%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 47/140 (34%)
Syt4NP_477464.1 C2A_Synaptotagmin-4-11 179..322 CDD:176034 32/160 (20%)
C2B_Synaptotagmin-4 332..473 CDD:176049 49/144 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468148
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 1 1.000 - - mtm1065
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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