DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and DH11.5

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001254131.1 Gene:DH11.5 / 3565199 WormBaseID:WBGene00008438 Length:825 Species:Caenorhabditis elegans


Alignment Length:625 Identity:123/625 - (19%)
Similarity:206/625 - (32%) Gaps:196/625 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 RSASATPIPNPGPGSMAGDTRAVQSCHATPTRPARVKKLTIRVNDSSSSSSGH------------ 216
            :.|||:       |::..:....|||...   ..|.:|.....|||...|.||            
 Worm   233 KDASAS-------GNVYNNGEYSQSCDLI---NGRSRKSPSTTNDSGRGSQGHLEEKMEAMVIEE 287

  Fly   217 -------SEPEDEVD----------------------TGVGIG----VGVVGGGMAKGIASTRLQ 248
                   .|.|:|:|                      |.:|:.    .....||....||.....
 Worm   288 HLENDCGCEEEEEIDAPILSSKRSGINRHRTSSCPDITSLGLNHPTTSAASSGGKKCPIAVDTDT 352

  Fly   249 REDSF-RLRAYGSIRSFIDG-GERKLSNSFFFNRQQ--------------------SQRPS---E 288
            .||:| |::...|..|..|. .||:|:..|...|:|                    |:|.:   :
 Worm   353 EEDNFERVKRPCSPISAADCLVERRLNRKFIEQRRQQVAMCHIDETCDVVSRISTTSRRTAQTED 417

  Fly   289 CPEYDS----------VSMSKLRRESS----FLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQ 339
            ..::|.          :|.::|..:.|    |...|:....:  .:.:.|.||.:.:.||.....
 Worm   418 LADFDDNASSIILDHFLSTTELNFDDSDSADFSLNGACEDEF--DEPAPSSSNTATSVQTDLTLL 480

  Fly   340 QHQQQLQ---QHCRDPLLGWLEIAISY-------REAFHSLDCTMVRARDLPAMDAAGLADP--- 391
            ..:|::.   :||||..:...|..:::       .::|.::....|....:||..|.  .||   
 Worm   481 NVEQEISEYLEHCRDASVNITEEGMNFIAKHFFEYQSFMNIPHKAVHLHKVPASQAG--TDPSMG 543

  Fly   392 YCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYG--- 453
            :...|::....| :.....|...||:...|...:..:....|..|.|           |::|   
 Worm   544 WAPKNMLKAGKH-QPAPGARANRVHRDPRPNGTKYGRAGKHEHREWG-----------DRHGELR 596

  Fly   454 ----------------HDFLGA--AKVC------LSTVHSTSQYRI--SVPLGVEDQYSNAAEMA 492
                            :|..||  |..|      |:|...|.|.::  :.|   |....||...|
 Worm   597 DEKVACHKDAWTKFLANDDQGARTAFECDFEDRVLATEEETLQEKLCRTSP---EAMNLNALYAA 658

  Fly   493 QNWPNG------KMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSDPFVKIQL----------K 541
            .|....      ::|..|.|....:.:...||:.   .|:..|.:  ||.:|.|          :
 Worm   659 ANKAVSCGGDVCELLTILTYAPTVQFVTTTVKKA---KALPYNNA--PFARIMLFEGRRLMEQKQ 718

  Fly   542 PDAHKNKKHKTSVKW-----------RTLNP---IYNEEFYFEASPHDLNKEMLILTVWDKDLGK 592
            ...:.:..||:||..           ...||   .::|.|.|...|..|::..:::.::|.|...
 Worm   719 TTVNPSLVHKSSVDGSKPSSSSASTSSNDNPSDVSFSESFLFHVPPTKLDRSHIVIELYDHDDEG 783

  Fly   593 SNDFLGSLQLGAQSKGERLQQWLDCIR---LPDHFHEKWH 629
            ....:|...:|....|.....|:..:|   ||...   ||
 Worm   784 GLQKIGHCVIGRLVDGTGNAHWIQMVRQHGLPVCM---WH 820

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600 3/7 (43%)
C2A_Rabphilin_Doc2 354..477 CDD:176000 28/161 (17%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 33/158 (21%)
DH11.5NP_001254131.1 C2B_Synaptotagmin 671..822 CDD:175975 33/158 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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