DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and Syt1

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_523460.2 Gene:Syt1 / 33473 FlyBaseID:FBgn0004242 Length:474 Species:Drosophila melanogaster


Alignment Length:314 Identity:95/314 - (30%)
Similarity:145/314 - (46%) Gaps:43/314 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   332 SQTQSQYQQHQQQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGLADPYCKLN 396
            ::...:..:..:|.:|.     ||.|...:.|....:||..|:::|.:|||:|..|.:|||.|:.
  Fly   176 TENAEEGDEEDKQSEQK-----LGRLNFKLEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVY 235

  Fly   397 IITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYG-HDFLGAA 460
            :: |:...|:    .||...||.:|.||||..|..:...:..|..:..|:||.|::. ||.:|..
  Fly   236 LL-PDKKKKF----ETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEV 295

  Fly   461 KVCLSTVHSTSQYRISVPLGVEDQYSNAAEMAQNWPN-------------GKMLLSLCYNTKRRA 512
            ||.|.|:                   :.|:..:.|.:             |.:..||.|......
  Fly   296 KVPLCTI-------------------DLAQTIEEWRDLVSVEGEGGQEKLGDICFSLRYVPTAGK 341

  Fly   513 LVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLN 577
            |.|.:.:..||..||..|.|||:|||.:..:..:.||.|||:|..||||.|||.|.||.....:.
  Fly   342 LTVVILEAKNLKKMDVGGLSDPYVKIAIMQNGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQIQ 406

  Fly   578 KEMLILTVWDKDLGKSNDFLGSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCL 631
            |..|::||.|.|...:::.:|...||....|..|:.|.|.:..|.....:||.|
  Fly   407 KICLVVTVVDYDRIGTSEPIGRCILGCMGTGTELRHWSDMLASPRRPIAQWHTL 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600
C2A_Rabphilin_Doc2 354..477 CDD:176000 41/123 (33%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 48/131 (37%)
Syt1NP_523460.2 Podoplanin 5..136 CDD:283467
C2A_Synaptotagmin-1-5-6-9-10 192..316 CDD:176031 43/152 (28%)
C2B_Synaptotagmin-1 326..461 CDD:176047 50/135 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468144
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 1 1.000 - - mtm1065
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X85
54.840

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