DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and Syt15

DIOPT Version :9

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_853663.2 Gene:Syt15 / 306285 RGDID:727964 Length:422 Species:Rattus norvegicus


Alignment Length:418 Identity:94/418 - (22%)
Similarity:169/418 - (40%) Gaps:80/418 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 GIASTRL-----------QREDSFRLRAYGSIRSFIDGGERKLSNSFFFNRQQSQRPSECPEYDS 294
            ||.|.||           |..|..||.          ||:..::         .|.|...||:.:
  Rat    63 GIPSVRLPSVPFVVPPSHQGRDWVRLH----------GGDWAVA---------PQDPCPVPEHIT 108

  Fly   295 VSMSKLRRESS--FLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQQQLQQHCRDPLLGWL 357
            .:.|....::|  ....||::                     ...|:..:...:....|..||.|
  Rat   109 CTSSPAAGQTSLPLCVMGSIN---------------------PELYKSSEDVSEAGFPDGCLGRL 152

  Fly   358 EIAISYREAFHSLDCTMVRARDL--PAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRN 420
            ..::.|::....|...:::|:.|  ||...:.|.    ||::: |:..    |:.::|...||.|
  Rat   153 WFSVEYQQESERLLVDLIKAQHLQVPAETCSTLV----KLHLL-PDKR----RFLQSKAKRKTCN 208

  Fly   421 PEFNETLQFVGVEPEELGNSLIYVALFDDDKY-GHDFLGAAKVCLSTVHST---SQYRISVPLGV 481
            |:|:|:..| .|..:.:...::..:::..:|. .|..||  :|.....:.|   .::|:   :..
  Rat   209 PQFDESFIF-QVSSKSVAQRVLKFSVYHVNKQRKHQLLG--QVLFPLKNETLAGDRHRV---IWR 267

  Fly   482 EDQYSNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAHK 546
            :.:..|...:::   .|.:...|.||.....|.|.|.:...|...::.|....|||:.|......
  Rat   268 DLEAENLEPLSE---FGDLQFCLSYNDYLSRLTVVVLRAKGLQLQEDRGVVSVFVKVSLMNHNKF 329

  Fly   547 NKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWDKDLGKSNDFLGSLQLG--AQSKGE 609
            .|..:||....::||:|||.|.|:|..::|:...|.|.|.....|..:..||.:.:|  ..::|:
  Rat   330 VKCKRTSAVLGSVNPVYNETFSFKADANELDTASLSLVVLQITEGDKSYPLGRVVVGPYMYTRGK 394

  Fly   610 RLQQWLDCIRLPDHFHEKWHCLA-PDNP 636
            .|:.|.:.:|.|....::||.|. |..|
  Rat   395 ELEHWNEMLRKPKELVKRWHALCRPMEP 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 PHD_SF 84..172 CDD:304600
C2A_Rabphilin_Doc2 354..477 CDD:176000 30/128 (23%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 38/133 (29%)
Syt15NP_853663.2 C2A_Synaptotagmin-15-17 150..270 CDD:176036 29/134 (22%)
C2B_Synaptotagmin-15 280..417 CDD:176054 39/136 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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