DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rph and Syt3

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_061995.1 Gene:Syt3 / 25731 RGDID:3805 Length:588 Species:Rattus norvegicus


Alignment Length:487 Identity:121/487 - (24%)
Similarity:195/487 - (40%) Gaps:95/487 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 PGSMAGD--------------TRAVQSCHATPTRPARVKKLTIRVNDSSSSSSGHSEPEDEVDTG 226
            ||.:.|.              ..||.|..|...:|::                  :.||...:.|
  Rat   149 PGGLGGSEPPEPSYLDMDSYPEAAVASVVAAGVKPSQ------------------TSPELPSEGG 195

  Fly   227 VGIGVGVV---GGGMAKGIASTRLQREDSFRLRAYGSIRSFIDGGERKLSNSFFFNR---QQSQR 285
            .|.|:.::   |||:..  |.:..|.........|.::       .|.|:......:   ...:|
  Rat   196 TGSGLLLLPPSGGGLPS--AQSHQQVTSLAPTTRYPAL-------PRPLTQQTLTTQADPSSEER 251

  Fly   286 PSECP------EYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQQQ 344
            |...|      |..:..:.:::.|              :...:|.|...:|....::        
  Rat   252 PPALPLPLPGGEEKAKLIGQIKPE--------------LYQGTGPGGRRTGGGSGEA-------- 294

  Fly   345 LQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTKYTRW 409
             ...|     |.:..|:.|......|...:::|.||||.|:.|.:|||.|:.:: |:...|:   
  Rat   295 -GAPC-----GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL-PDRKKKF--- 349

  Fly   410 QRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYG-HDFLGAAKVCLSTVHSTSQY 473
             :||...||.||.||||.|| .|...||....::.:::|.|::. ||.:|  :|.|..:...::.
  Rat   350 -QTKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIG--QVVLDNLLELAEQ 410

  Fly   474 RISVPLGVEDQYSNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSDPFVKI 538
            ....||. .|.....:|.|.   .|::..||||......|.|.:.:..||.|||..|.|||:||.
  Rat   411 PPDRPLW-RDILEGGSEKAD---LGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKA 471

  Fly   539 QLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWDKDLGKSNDFLGSLQLG 603
            .|..:..:.||.|||:|..||||.|||...|:.:|..:....|.:.|.|.|....|:.:|..::|
  Rat   472 SLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVG 536

  Fly   604 AQSKGER-LQQWLDCIRLPDHFHEKWHCLAPD 634
            .::.... .:.|.:.:..|....|.||.|..:
  Rat   537 PEAADPHGREHWAEMLANPRKPVEHWHQLVEE 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000 39/123 (32%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 45/132 (34%)
Syt3NP_061995.1 Cysteine motif. /evidence=ECO:0000250|UniProtKB:O35681 10..34
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 129..161 3/11 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..222 11/58 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..257 2/18 (11%)
C2A_Synaptotagmin-1-5-6-9-10 297..422 CDD:176031 43/138 (31%)
C2B_Synaptotagmin-3-5-6-9-10 431..565 CDD:176048 46/133 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.