DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and Syt1

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_001028852.2 Gene:Syt1 / 25716 RGDID:3803 Length:421 Species:Rattus norvegicus


Alignment Length:359 Identity:107/359 - (29%)
Similarity:169/359 - (47%) Gaps:40/359 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 FNRQQSQRPSECPEYDSVSMSKLRRESSFLRRGSVSSSWSISDSSGSGSNNSGNSQTQSQYQQHQ 342
            |.::..::..|....::::|..::      ..|......::.|.........|..:.:.:.::. 
  Rat    84 FKKKNKKKGKEKGGKNAINMKDVK------DLGKTMKDQALKDDDAETGLTDGEEKEEPKEEEK- 141

  Fly   343 QQLQQHCRDPLLGWLEIAISYREAFHSLDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTKYT 407
                       ||.|:.::.|....:.|...:::|.:|||:|..|.:|||.|: .:.|:...|: 
  Rat   142 -----------LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKV-FLLPDKKKKF- 193

  Fly   408 RWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYVALFDDDKYG-HDFLGAAKVCLSTV---H 468
               .||...||.||.|||...| .|...|||...:.:|::|.|::. ||.:|..||.::||   |
  Rat   194 ---ETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 254

  Fly   469 STSQYRISVPLGVEDQYSNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSD 533
            .|.::|        |..|  ||..:....|.:..||.|......|.|.:.:..||..||..|.||
  Rat   255 VTEEWR--------DLQS--AEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSD 309

  Fly   534 PFVKIQLKPDAHKNKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWDKD-LGKSNDFL 597
            |:|||.|..:..:.||.||::|..||||.|||.|.||.....:.|..:::||.|.| :|| ||.:
  Rat   310 PYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGK-NDAI 373

  Fly   598 GSLQLGAQSKGERLQQWLDCIRLPDHFHEKWHCL 631
            |.:.:|..|.|..|:.|.|.:..|.....:||.|
  Rat   374 GKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000 44/126 (35%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 51/132 (39%)
Syt1NP_001028852.2 Syt1_N 5..112 CDD:409248 4/33 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 112..141 2/28 (7%)
Phospholipid binding. /evidence=ECO:0000305 135..381 92/274 (34%)
C2A_Synaptotagmin-1-5-6-9-10 142..264 CDD:176031 45/135 (33%)
C2B_Synaptotagmin-1 273..408 CDD:176047 53/136 (39%)
Blue background indicates that the domain is not in the aligned region.

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