DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rph and tcb1

DIOPT Version :10

Sequence 1:NP_572651.1 Gene:Rph / 32002 FlyBaseID:FBgn0030230 Length:638 Species:Drosophila melanogaster
Sequence 2:NP_587865.1 Gene:tcb1 / 2539288 PomBaseID:SPCC962.01 Length:1429 Species:Schizosaccharomyces pombe


Alignment Length:413 Identity:89/413 - (21%)
Similarity:144/413 - (34%) Gaps:129/413 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 YDSVSMSKLRRESSFLRRGSVSSSW-------SISDSSGSGSN-----------------NSGNS 332
            |.|:::.|..|.:..|.|.:::|:.       :::.:|..|.:                 |:.||
pombe   839 YASINVQKYIRNAKRLDRSALASTVFGTSEVNALTLTSRKGQSVRGTISVNCDYRPCLRLNTDNS 903

  Fly   333 QTQSQYQQHQQQLQQHCRDP----------------LLGWLEI--AISYREAFHSLDCTMVRARD 379
            ..||      .:..|...||                :...:.:  |:.|...|..:.......:|
pombe   904 SKQS------SENVQSATDPTTPAKDNSTSNAETSSITSVISVNEALQYPSGFALISIVSADLQD 962

  Fly   380 LPAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQFVGVEPEELGNSLIYV 444
            : .:|.....|......|.||.|.||..||. :..:...|..:|:||.                .
pombe   963 V-GVDLRVFTDNAAFPFITTPIAKTKTPRWS-SFGISMVRELQFSETT----------------F 1009

  Fly   445 ALFDDDKYGHDFLGAAK----VC---LSTVHSTSQ-----YRISVPLGVEDQYSNAAEMAQNWPN 497
            .|.|         ||.|    ||   :.|:...|:     |.:.:| |...|.::          
pombe  1010 QLTD---------GAKKDPKVVCEHSVKTLDLVSEALGRPYSVEIP-GSNGQLNH---------- 1054

  Fly   498 GKMLLSLCYNTKRRAL-----VVNVKQCINLMAMDNNG-------SSDPFVKIQLKPD-AHKNKK 549
              :.||:.|......|     .:| ...::.|..|...       ||||||.::|..: |.|:|.
pombe  1055 --VRLSITYMPVPMTLNPMESYIN-SGSLHFMLQDGQNLPIGDIRSSDPFVVLKLNGESAFKSKV 1116

  Fly   550 HKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWDKDLGKSNDFLG-------SLQLGAQSK 607
            .|     :.|||::|||.........|  ::|.|..:|.|:|:..|.||       ||:...:|:
pombe  1117 IK-----KNLNPVWNEEADIVVQNRVL--DVLELVCYDWDMGEKPDVLGTSNIDLLSLEPNVESQ 1174

  Fly   608 GE-RLQQWLDCIRLPDHFHEKWH 629
            .. :|......|.....|...||
pombe  1175 QSIKLDSKTGTINASLRFVPGWH 1197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RphNP_572651.1 FYVE_like_SF 84..172 CDD:333710
C2A_Rabphilin_Doc2 354..477 CDD:176000 28/136 (21%)
C2B_Rabphilin_Doc2 499..631 CDD:176030 41/152 (27%)
tcb1NP_587865.1 COG5038 45..1275 CDD:227371 89/413 (22%)
C2 1332..>1373 CDD:472691
Blue background indicates that the domain is not in the aligned region.

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